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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACATCAGGGAAAAAAATATGCTATGTACAATTTCCTCAAAGATTTGATGGGATTGATCGTCATGATAGATACTCAAATAGAAATGTTGTATTCTTTGATgtaagtaaaaatttgtagtggatttatacttgcatatattttactgtgctttggaggaaaggctaatctgtgtttcattatatttatatag

Basic information

species Glycine max
transcript GLYMA10G36790.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36790.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM5G840940_T01 (Zea mays), 5'ss of exon 1
TACATCAGGGAAAAAAATATGCTATGTACAATTTCCTCAAAGATTTGATGGGATTGATCGTCATGATAGATACTCAAATAGAAATGTTGTATTCTTTGATgtaagtaaa-----aatttgtagtggatttatacttgcatatattttactgtgctttggaggaaaggctaatctgtgtttcattatatttatatag
    |  ||  | || || || ||||| |||||||| || ||||||||||| |||||||  || |||||||| |||||    |||||||| || ||||||||| |||       ||||  |  |   ||||| ||   | | |||  |    |  ||      |||  |   |  | | |  || | |||  |   
AGTGTTGGGAGAGAAGATTTGTTATGTTCAATTTCCGCAGAGATTTGATGGCATTGATCAACACGATAGATATTCAAACCACAATGTTGTGTTTTTTGATgtatgtatggcatgaattcattctaactttat-ctgaaagacattgaagatagtattctgaacaagtttctgcattatctacttctctttgcag--

upper sequence: GLYMA10G36790.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv18s0072g00370.t01 (Vitis vinifera), 5'ss of exon 10
TACATCAGGGAAAAAAATATGCTATGTACAATTTCCTCAAAGATTTGATGGGATTGATCGTCATGATAGATACTCAAATAGAAATGTTGTATTCTTTGATgtaagtaaaaatttgtagtg--gattt-atact----tgcatatattttactgtgc----tttgga---ggaaaggctaatctgtgtttcattatatttatatag
 |||||||| || ||||| || |||||||| ||||||||||| |||||||||||||||||  ||||||||||||||||| | || |||||||||||||||||| ||||     |  ||||   |||| ||||     |||| | || | | | ||     ||| ||    | || |||||| | | | |  | |  |  | | ||
CACATCAGGAAAGAAAATCTGTTATGTACAGTTTCCTCAAAGGTTTGATGGGATTGATCGCAATGATAGATACTCAAATCGCAACGTTGTATTCTTTGATgtacgtaaggcactccagtgtgaatttgatacaatgatgcacagatgtgaatttgtaaaattttgattgaggaaagctaattt-tttgttttcaattaaaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192297356|gb|FG990662.1|FG990662
EST:     GGATTGATCGTCATGATAGATACTCAAATAGAAATGTTGTATTCTTTGAT                         ATAAACATGAAAGGTTTAGATGGCATCCAAGGACCAATATATGTGGGAACT
genomic: GGATTGATCGTCATGATAGATACTCAAATAGAAATGTTGTATTCTTTGATgtaagtaaaa ... atttatatagATAAACATGAAAGGTTTAGATGGCATCCAAGGACCAATATATGTGGGAACT