Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTACTTATGTGCAATCTGTTTCGATTCCACTTCTCTGTATTAGTGCTCTGGATGATCCAGTCTGTACCAGGGAAGCCATTCCCTGGGATGAATGCAGgtacactgcttgattgtttttccttggttctaattattttgatttctctttcattacttcagcatcaatttaatgttctattattttgatag

Basic information

species Glycine max
transcript GLYMA10G35910.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35910.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os05g35730.1 (Oryza sativa), 5'ss of exon 11
GTTCTACTTATGTGCAATCTGTTTCGATTCCACTTCTCTGTATTAGTGCTCTGGATGATCCAGTCTGTACCAGGGAAGCCATTCCCTGGGATGAATGCAGgtacactgcttgattgtttttccttggttctaattattttgatttctctttcattacttcagcatcaatttaatgttctattattttgatag
|| | | |||  |      ||| ||  | || || || ||||| |||||||| ||||| ||| | || || ||||| |||||||||||||| |||||||||||    ||||  || | ||||    | ||  |  ||  | |  | |  ||   || |     || |  |  |  || | | |||  |    
GTGCAAATTACATTAGTAATGTGTCAGTGCCCCTGCTTTGTATCAGTGCTCTTGATGACCCACTTTGCACAAGGGAGGCCATTCCCTGGGACGAATGCAGgtaa---gcttacttttctttcaaaagatc--accatcctaaagttttattgtgtattg----atgaggtccacattgtgtgattcag----

upper sequence: GLYMA10G35910.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G011169_T01 (Zea mays), 5'ss of exon 11
GTTCTACTTATGTGCAATCTGTTTCGATTCCACTTCTCTGTATTAGTGCTCTGGATGATCCAGTCTGTACCAGGGAAGCCATTCCCTGGGATGAATGCAGgtacac-tgct-tgattgtttttccttggttctaattattttgatttctctttcattacttcagcatcaatttaatgttctattattttgatag
|| | | |||| |      ||| ||  ||||||| || ||||| |||||  | ||||| ||  |||| || ||||| |||||||||||||||||||||||||| || | |  |||  | || | ||   |  |  ||  ||| || | |   | || |   |   ||  ||    || | ||            
GTGCAAATTATATCGGTAATGTGTCAGTTCCACTGCTTTGTATCAGTGCCTTAGATGACCCCCTCTGCACAAGGGAGGCCATTCCCTGGGATGAATGCAGgtaaacatacgatgaaagattattctgaatattttttggtttaatgtgt---tgataaggcccttatgcatgcgctgatttag-----------

upper sequence: GLYMA10G35910.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G34340.1 (Arabidopsis thaliana), 5'ss of exon 11
GTTCTACTTATGTGCAATCTGTTTCGATTCCACTTCTCTGTATTAGTGCTCTGGATGATCCAGTCTGTACCAGGGAAGCCATTCCCTGGGATGAATGCAGgtacactgcttgattgtttttccttggttctaattattttgatttctctttcattacttcagcatcaatttaatgttctattattttgatag
|  ||   || ||   |  |||  || | ||||| |||||||| |||||||| ||||||||| | || || | |||||| ||||||||||| |||||||||||    ||     | | | ||  |  || |||  || || | | || || ||    || | ||| || ||  | ||  |            
GCACTCAATACGTAGGAAATGTGGCGGTGCCACTACTCTGTATAAGTGCTCTAGATGATCCATTATGCACAAAGGAAGCTATTCCCTGGGACGAATGCAGgtaagacgc-----tatctatctct--ttttaa--atcttaaatcctgttacagcgatt-aacatgaagtttctattgaaaag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337640|gb|CO981506.1|CO981506
EST:     CTGGATGATCCAGTCTGTACCAGGGAAGCCATTCCCTGGGATGAATGCAG                         GGCGAATAAAAATATTGTCTTGGCTACTGTAAAACATGGAGGACATCTGGC
genomic: CTGGATGATCCAGTCTGTACCAGGGAAGCCATTCCCTGGGATGAATGCAGgtacactgct ... attttgatagGGCGAATAAAAATATTGTCTTGGCTACTGTAAAACATGGAGGACATCTGGC
EST: gi|208172801|gb|GD969376.1|GD969376
EST:     CTGGATGATCCAGTCTGTACCAGGGAAGCCATTCCCTGGGATGAATGCAG                         GGCGAATAAAAATATTGTCTTGGCTACTGTAAAACATGGAGGACATCTGGC
genomic: CTGGATGATCCAGTCTGTACCAGGGAAGCCATTCCCTGGGATGAATGCAGgtacactgct ... attttgatagGGCGAATAAAAATATTGTCTTGGCTACTGTAAAACATGGAGGACATCTGGC