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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGTATTCTTATTTTTGGATTCCATTTATCCCAGTAATTgtaagcacaaaccactcattctgcttatgttgttggtctattttttcttctattaatctgatcataaagtttaatgtgaaatttacag

Basic information

species Glycine max
transcript GLYMA10G35640.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35640.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv13s0019g04070.t01 (Vitis vinifera), 5'ss of exon 10
GGTGGTATTCTTATTTTTGGATTCCATTTATCCCAGTAATTgtaagcacaa----accac------tcattctgcttatgttgttggtctattttttcttctattaatctgatcataaagt--ttaatgtgaaatttacag-----------------------
||||||||||||| |||||| ||||||| |||||  |||||||||||||||    |  ||      |||||   |     ||| |  ||  ||||  | | ||| | | ||     |  |   | |   ||| |  |   |                       
GGTGGTATTCTTACTTTTGGCTTCCATTCATCCCCTTAATTgtaagcacaatttcattacaatacttcatttctccagaattggttttcagttttcacatatatgattttgggttgagggcaataaggatgacaagtttggttgaatcaatgtgaatgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6133875|gb|AW132268.1|AW132268
EST:     GGTGGTATTCTTATTTTTGGATTCCATTTATCCCAGTAATT                         ATAATCTTGTTGGTGGGAACAAAGCTACAAATGATCATAACAGAGATGGCA
genomic: GGTGGTATTCTTATTTTTGGATTCCATTTATCCCAGTAATTgtaagcacaa ... aaatttacagATAATCTTGTTGGTGGGAACAAAGCTACAAATGATCATAACAGAGATGGCA
EST: gi|6133871|gb|AW132264.1|AW132264
EST:     GGTGGTATTCTTATTTTTGGATTCCATTTATCCCAGTAATT                         ATAATCTTGTTGGTGGGAACAAAGCTACAAATGATCATAACAGAGATGGCA
genomic: GGTGGTATTCTTATTTTTGGATTCCATTTATCCCAGTAATTgtaagcacaa ... aaatttacagATAATCTTGTTGGTGGGAACAAAGCTACAAATGATCATAACAGAGATGGCA