1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgctgttctgtaattactaattagttgtttctagatatgcactatatcagtcacatgtctatatttgttttacttatattatctgtattgacaatcag
species | Glycine max |
transcript | GLYMA10G35560.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAG GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTNTCAAGCCAEST: gi|16276792|gb|BI942046.1|BI942046
genomic: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgc ... tgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
EST: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAG GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAEST: gi|193486868|gb|FK450449.1|FK450449
genomic: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgc ... tgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
EST: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAG GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAEST: gi|207808737|gb|GD776748.1|GD776748
genomic: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgc ... tgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
EST: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAG GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAEST: gi|10843361|gb|BF066663.1|BF066663
genomic: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgc ... tgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
EST: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAG GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAEST: gi|208247306|gb|GE048950.1|GE048950
genomic: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgc ... tgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
EST: CAAGAACAAATCGCTCTGGTGGGATACAG GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
genomic: CAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgc ... tgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgctgttctgtaattactaattagttgtttctagatatgcactatatcagtcacatgtctatatttgttttacttatattatctgtattgacaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG