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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTGTGATGATCAAAATACACAACAAATTATCATGGAGGAAATCATGCAATCTGTCAGCACTTTAGCACAGGATCAATATGGAAATTATGTTATTCAGgtatgtagctttcattatatgaactttttcatatgggataggaaatgcacatcggcattacagatgcaacattttatgctttgacacttctgtgcttaat...

Basic information

species Glycine max
transcript GLYMA10G35290.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35290.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G10360.1 (Arabidopsis thaliana), 5'ss of exon 8
ACATTGTGATGATCAAAATACACAACAAATTATCATGGAGGAAATCATGCAATCTGTCAGCACTTTAGCACAGGATCAATATGGAAATTATGTTATTCAGgtatgtagctttcattatatgaactttttcatatgggataggaaatgcacatcggcattacagatgcaac--attttatgctttgacacttctgtgcttaat
 |||  |||||||  | | || ||||  || || ||||||||||||||| | || ||| | ||| ||||||| |||||||| |||||||||||||| |||||| |   ||     |  ||  || |||     |      | ||||| ||| |     || ||||  | |   |||   ||| |                  
GCATATTGATGATATAGAAACCCAACGGATCATTATGGAGGAAATCATGGATTCAGTCTGTACTCTAGCACAAGATCAATACGGAAATTATGTTATCCAGgtaagattctgaagcttaattgacgtttctgcttcat---gaaaatggaca-cactgataaagattaatcctgtttccggctgtag----------------

upper sequence: GLYMA10G35290.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv13s0019g04640.t01 (Vitis vinifera), 5'ss of exon 8
ACATTGTGATGATCAAAATACACAACAAATTATCATGGAGGAAATCATGCAATCTGTCAGCACTTTAGCACAGGATCAATATGGAAATTATGTTATTCAGgta-tgtagct--ttcattatatgaactttttcatatgggataggaaatgcacatcggcattacagatgcaacattttatgctttgacacttctgtgcttaat---------------------------------------------------------------------------------------------
|||||||||||||  || |||||||||||| || ||||| ||||||||||| |||||  | | | | ||||| || |||||||| |||||||||||||||||| | |  ||  |  ||| | ||    ||||| | |  |||   |       ||   | || |    | |    ||| |  | ||||  |||  |  || ||                                                                                             
ACATTGTGATGATTCAAGTACACAACAAATCATTATGGATGAAATCATGCAGTCTGTTTGTATTCTGGCACATGACCAATATGGGAATTATGTTATTCAGgtacttttactaataaattttttgtttattttcttgttagatttcatgcttgaattcccttt-ctctggtacttgtttcttttctgacttttccct-tttgatgatctctgttttatcattattgtgttattattttacctataattttttttttacttcatttgtcccctgaggttcgttcctttgcttgtttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213590609|gb|DB973340.1|DB973340
EST:     GTGCAATAATGAAATGTGTACGTGATCAAAATGGAAACCATGTTATTCAGAAGTGTATAGAGTGTGTCCCTCAAGATAAAATTCAGTTTATTGTTTCATCCTTTTATGGGCAAGTTGTTGCACTTT
genomic: GTGCAATAATGAAATGTGTACGTGATCAAAATGGAAACCATGTTATTCAGAAGTGTATAGAGTGTGTCCCTCAAGATAAAATTCAGTTTATTGTTTCATCCTTTTATGGGCAAGTTGTTGCACTTT
EST: gi|21888591|gb|BQ741804.1|BQ741804
EST:     AATCTGTCAGCACTTTAGCACAGGATCAATATGGAAATTATGTTATTCAG                         CATATTGTGGAACATGGTAAACCACATGAACGGACTACCATTATCAGCAAG
genomic: AATCTGTCAGCACTTTAGCACAGGATCAATATGGAAATTATGTTATTCAGgtatgtagct ... tctttggtagCATATTGTGGAACATGGTAAACCACATGAACGGACTACCATTATCAGCAAG
EST: gi|26057513|gb|CA800427.1|CA800427
EST:     GTGCAATAATGAAATGTGTACGTGATCAAAATGGAAACCATGTTATTCAGAAGTGTATAGAGTGTGTCCCTCAAGATAAAATTCAGTTTATTGTTTCATCCTTTTATGGGCAAGTTGTTGCACTTT
genomic: GTGCAATAATGAAATGTGTACGTGATCAAAATGGAAACCATGTTATTCAGAAGTGTATAGAGTGTGTCCCTCAAGATAAAATTCAGTTTATTGTTTCATCCTTTTATGGGCAAGTTGTTGCACTTT
EST: gi|6914723|gb|AW396253.1|AW396253
EST:     GTGCAATAATGAAATGTGTACGTGATCAAAATGGAAACCATGTTATTCAGAAGTGTATAGAGTGTGTCCCTCAAGATAAAATTCAGTTTATTGTTTCATCCTTTTATGGGCAAGTTGTTGCACTTT
genomic: GTGCAATAATGAAATGTGTACGTGATCAAAATGGAAACCATGTTATTCAGAAGTGTATAGAGTGTGTCCCTCAAGATAAAATTCAGTTTATTGTTTCATCCTTTTATGGGCAAGTTGTTGCACTTT
EST: gi|254348286|gb|GR851965.1|GR851965
EST:     AATCTGTCAGCACTTTAGCACAGGATCAATATGGAAATTATGTTATTCAG                         CATATTGTGGAACATGGTAAACCACATGAACGGACTACCATTATCAGCAAG
genomic: AATCTGTCAGCACTTTAGCACAGGATCAATATGGAAATTATGTTATTCAGgtatgtagct ... tctttggtagCATATTGTGGAACATGGTAAACCACATGAACGGACTACCATTATCAGCAAG
EST: gi|254330699|gb|GR841964.1|GR841964
EST:     AATCTGTCAGCACTTTAGCACAGGATCAATATGGAAATTATGTTATTCAG                         CATATTGTGGAACATGGTAAACCACATGAACGGACTACCATTATCAGCAAG
genomic: AATCTGTCAGCACTTTAGCACAGGATCAATATGGAAATTATGTTATTCAGgtatgtagct ... tctttggtagCATATTGTGGAACATGGTAAACCACATGAACGGACTACCATTATCAGCAAG
EST: gi|21889642|gb|BQ742855.1|BQ742855
EST:     GTGCAATAATGAAATGTGTACGTGATCAAAATGGAAACCATGTTATTCAGAAGTGTATAGAGTGTGTCCCTCAAGATAAAATTCAGTTTATTGTTTCATCCTTTTATGGGCAAGTTGTTGCACTTT
genomic: GTGCAATAATGAAATGTGTACGTGATCAAAATGGAAACCATGTTATTCAGAAGTGTATAGAGTGTGTCCCTCAAGATAAAATTCAGTTTATTGTTTCATCCTTTTATGGGCAAGTTGTTGCACTTT