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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACCATACTTAAGTGCCTCTTTTGGTATCATCTATGTCCTTGTGAAACCTGCCgtgagtaattttcctgatatgtgataaaattattccccacttttatagttacaaccagctttatgatcctgatatgactattaatttcttgtcgtgcag

Basic information

species Glycine max
transcript GLYMA10G34820.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34820.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv13s0106g00610.t01 (Vitis vinifera), 5'ss of exon 10
GTACCATACTTAAGTGCCTCTTTTGGTATCATCTATGTCCTTGTGAAACCTGCCgtgagtaattttcctgatatgtgataaaattattccccacttttatagttacaaccagctttatgatcctgatatgactattaatttcttgtcgtgcag------------------------------------------
||||||||| | |||||||| |||||  || |||||||||||||||||||| | || |||| | || ||  |   |        | | |   | || | || | |||  ||   ||||| |  |    |   |||| | || || |     |                                           
GTACCATACCTCAGTGCCTCATTTGGAGTCGTCTATGTCCTTGTGAAACCTTCTgtaagtactatttctattgaatctgttttctttcctagaattctgtaatgacattcaa--ttatggttattcactttatattcaattttttttaaatattttttcctcttttcctgtgggttctttctttttacttgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51338462|gb|CO982328.1|CO982328
EST:     CATACTTAAGTGCCTCTTTTGGTATCATCTATGTCCTTGTGAAACCTGCC                         ACTTATGCTATTATTTCAAATGCGTCAAGCTCAACCAATCAG
genomic: CATACTTAAGTGCCTCTTTTGGTATCATCTATGTCCTTGTGAAACCTGCCgtgagtaatt ... tgtcgtgcagACTTATGCTATTATTTCAAATGCGTCAAGCTCAACCAATCAG
EST: gi|51344538|gb|CO985271.1|CO985271
EST:     CATACTTAAGTGCCTCTTTTGGTATCATCTATGTCCTTGTGAAACCTGCC                         ACTTATGCTATTATTTCAAATGCGTCAAGCTCAACCAATCAG
genomic: CATACTTAAGTGCCTCTTTTGGTATCATCTATGTCCTTGTGAAACCTGCCgtgagtaatt ... tgtcgtgcagACTTATGCTATTATTTCAAATGCGTCAAGCTCAACCAATCAG
EST: gi|151406306|gb|EV276121.1|EV276121
EST:     CATACTTAAGTGCCTCTTTTGGTATCATCTATGTCCTTGTGAAACCTGCC                         ACTTATGCTATTATTTCAAATGCGTCAAGCTCAACCAATCAG
genomic: CATACTTAAGTGCCTCTTTTGGTATCATCTATGTCCTTGTGAAACCTGCCgtgagtaatt ... tgtcgtgcagACTTATGCTATTATTTCAAATGCGTCAAGCTCAACCAATCAG
EST: gi|18726842|gb|BM523788.1|BM523788
EST:     CATACTTAAGTGCCTCTTTTGGTATCATCTATGTCCTTGTGAAACCTGCC                         ACTTATGCTATTATTTCAAATGCGTCAAGCTCAACCAATCAG
genomic: CATACTTAAGTGCCTCTTTTGGTATCATCTATGTCCTTGTGAAACCTGCCgtgagtaatt ... tgtcgtgcagACTTATGCTATTATTTCAAATGCGTCAAGCTCAACCAATCAG