1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAGTAAATGAATGGGTAGTTACTGAGAAATTGGGAGATGCTCTTAAAACAAAATCAGGTGGTAAAGCAGCTAGGAAGTCTCGTATCAGGATTGGTGAAAGgtacacctatataaggagaatactcctaattttattaacttatcatttataacaatagaatgaacaacatagaaatgaatgagttcatttgattccctca...
species | Glycine max |
transcript | GLYMA10G34550.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAATCAGGTGGTAAAGCAGCTAGGAAGTCTCGTATCAGGATTGGTGAAAG GCTTCATTTCCTGGAACTTCTTGTGGGGGCCTATCTCTTTTTCTGTGCATGEST: gi|254320925|gb|GR827374.1|GR827374
genomic: AAATCAGGTGGTAAAGCAGCTAGGAAGTCTCGTATCAGGATTGGTGAAAGgtacacctat ... tgattaacagGCTTCATTTCCTGGAACTTCTTGTGGGGGCCTATCTCTTTTTCTGTGCATG
EST: AAATCAGGTGGTAAAGCAGCTAGGAAGTCTCGTATCAGGATTGGTGAAAG GCTTCATTTCCTGGAACTTCTTGTGGGGGCCTATCTCTTTTTCTGTGCATGEST: gi|31460157|gb|CD402545.1|CD402545
genomic: AAATCAGGTGGTAAAGCAGCTAGGAAGTCTCGTATCAGGATTGGTGAAAGgtacacctat ... tgattaacagGCTTCATTTCCTGGAACTTCTTGTGGGGGCCTATCTCTTTTTCTGTGCATG
EST: AAATCAGGTGGTAAAGCAGCTAGGAAGTCTCGTATCAGGATTGGTGAAAG GCTTCATTTCCTGGAACTTCTTGTGGGGGCCTATCTCTTTTTCTGTGCATG
genomic: AAATCAGGTGGTAAAGCAGCTAGGAAGTCTCGTATCAGGATTGGTGAAAGgtacacctat ... tgattaacagGCTTCATTTCCTGGAACTTCTTGTGGGGGCCTATCTCTTTTTCTGTGCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTAAATGAATGGGTAGTTACTGAGAAATTGGGAGATGCTCTTAAAACAAAATCAGGTGGTAAAGCAGCTAGGAAGTCTCGTATCAGGATTGGTGAAAGgtacacctatataaggagaatactcctaattttattaacttatcatttataacaatagaatgaacaacatagaaatgaatgagttcatttgattccctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccctc