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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCATCAAAGCTAATTGTGAAGGGAAATATAATATGGTCTGATAATCCAAATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagttttcttttcttcaccggttcttgttatacaatttgcacaaatttataaatgtagaaaacagtacgtgtgagagttcaaagtcagattccaagat...

Basic information

species Glycine max
transcript GLYMA10G34430.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34430.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 11
CCCATCAAAGCTAATTGTGAAGGGAAATATAATATGGTCTGATAATCCAAATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagttttcttttcttcaccggttcttgttatacaatttgcacaaatttataaatgtagaaaacagtacgtgtgagagttcaaagtcagattccaagat----
|||  | ||||| || || |||||||||||||| |||||||| || || |||||  | |||||||||||  | ||||| ||| |||||||||||||||| ||| ||   | ||  ||| |    |  |||| |        ||     ||    || |    | |  | |    || | | |||   | ||   || |      
CCCTGCGAAGCTGATGGTAAAGGGAAATATAATCTGGTCTGACAACCCTAATGACCTCAGCATCCAAGTCACAAGTCCTTCACATTTCAAGATTTGCACGgtatgtc--ccttctttcccaatcttctgttttggggc--acatttccttggtcatttttttacctcttctaaagacattgcaattgctgaccacatggaccta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22927691|gb|BU544822.1|BU544822
EST:     ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA                         CCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGG
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagttttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGG
EST: gi|31473611|gb|CD415624.1|CD415624
EST:     ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA                         CCTAAAAAGGTAATGTCGTTTGAGG
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagttttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGG
EST: gi|308098869|gb|HO760710.1|HO760710
EST:     ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA                         CCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGG
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagttttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGG
EST: gi|15813090|gb|BI785365.1|BI785365
EST:     ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA                         CCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGG
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagttttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGG
EST: gi|193676146|gb|FK618298.1|FK618298
EST:     ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA                         CCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGG
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagttttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGG
EST: gi|31305430|gb|CD390633.1|CD390633
EST:     ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA                         CCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGT
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagttttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGG
EST: gi|22932985|gb|BU550124.1|BU550124
EST:     ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA                         CCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGG
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagttttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGG