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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGGAAGATCATCAGCTGCATCAACTTCTGTGTCAATTGTTGATGCCATAAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGGTTTTCTTCTGGTgtaagttgatattagttgagtaacctcatgtatttgttaaaaaattagatgagtttttcagcaagactacaccttgttttacaacaaatcgatttaactg...

Basic information

species Glycine max
transcript GLYMA10G34150.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34150.3 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G129513_T01 (Zea mays), 5'ss of exon 10
ATGGGGAAGATCATCAGCTGCATCAACTTCTGTGTCAATTGTTGATGCCATAAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGGTTTTCTTCTGGTgtaagttgatattagttgagtaacctcatgtatttgttaaaaaattagatgagtttttcagcaagactacaccttgttttacaacaaatcgatttaactg
|||||| ||||||||||||||||| ||  |||| || || || ||||| || |||||  | ||||||||||| || || ||||| ||||||||| | || |||||||        |||||   |||  || |    | |||   ||   |  |  || |   ||    | |    |   || || ||||  |        
ATGGGGCAGATCATCAGCTGCATCGACCGCTGTTTCGATAGTGGATGCTATTAGATCCCTCGTAACTCCTACCCCAGAAGGTGACTGGTTTTCTACAGGGgtaagtt--------ttgag--gcctt-tgaaccgatcaaatctttgtttcggcattcctctaatggaaaag---gcgataaaaaaaatacag-------

upper sequence: GLYMA10G34150.3 (Glycine max), 5'ss of exon 10
lower sequence: AT5G58330.3 (Arabidopsis thaliana), 5'ss of exon 8
ATGGGGAAGATCATCAGCTGCATCAACTTCTGTGTCAATTGTTGATGCCATAAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGGTTTTCTTCTGGTgtaagttgatattagttgagtaacctcatgtatttgttaaaaaattagatgagtttttcagcaagactacaccttgttttacaacaaatcgatttaactg
||||||  |||| || ||||| || ||| |||| || ||||||||||| ||||  ||| | |||||||||||||| |||||||||||||||||  |||| |||  |     ||       ||  ||||| |   |   || ||  |||||  |||      ||||  |  ||   ||| |   | |  |  |||||    
ATGGGGTCGATCTTCTGCTGCTTCTACTGCTGTTTCCATTGTTGATGCTATAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGGgtacatcttcttt-------tacactcatttggataacaataagatagattggtt------caagttttaacagggttgtgtta-atgtaaatttag---

upper sequence: GLYMA10G34150.3 (Glycine max), 5'ss of exon 10
lower sequence: Vv13s0019g05250.t01 (Vitis vinifera), 5'ss of exon 10
ATGGGGAAGATCATCAGCTGCATCAACTTCTGTGTCAATTGTTGATGCCATAAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGGTTTTCTTCTGGTgtaagttgatattagttgagtaacctca----tgtatttgtt-----------aaaaaattagatgagtttttcagcaagactac--------accttgttttacaacaaatcgatttaactg------------------------------------------------------------
|||||| ||||| || |||||||||||| ||||||| || ||||||||||| |  ||| |||||||||| || || ||||||||||||||||||||||| |||||||   ||  |  |  ||   |      | |||||| |           || |||| |  |   | ||||  |||   ||         | | | | | | |  |  | | |  |  ||                                                            
ATGGGGGAGATCTTCTGCTGCATCAACTGCTGTGTCGATCGTTGATGCCATGAAGTCTCTAGTAACTCCCACCCCTGAGGGTGATTGGTTTTCTTCTGGAgtaagttttcatctgccgtatatggttgctgttctatttggttagtcttatgtaagaaatgaactagatctttccacaaacgtattgtttaagatcatatataatagtaggttgctgcagttgcatttttgtttatgattagttgttagtctccagtctcaccatttcaaacctcaaatatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10236029|gb|BE804977.1|BE804977
EST:     AGATCTTTAAGTA-CTCCTACTCCCGAGG-TGATTGGTTTTCTTTCTG-T                         GTATATAGCGATGGAAATNCT-ATGGAATAGCTGAAAGTATTGTTT-CAG
genomic: AGATCTTTA-GTAACTCCTACTCCCGAGGGTGATTGGTTTTCTT-CTGGTgtaagttgat ... gcaataccagGTATATAGCGATGGAAATCCTTATGGAATAGCTGAAGGTATTGTTTTCAG
EST: gi|254344943|gb|GR851426.1|GR851426
EST:     AAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGGGTTTTCTTCTGGT                         GTATATAGCAATGGAAATCCTTATGGGAATAGCTGAAGGTATTGTTTTCAG
genomic: AAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGG-TTTTCTTCTGGTgtaagttgat ... gcaataccagGTATATAGCGATGGAAATCCTTATGG-AATAGCTGAAGGTATTGTTTTCAG
EST: gi|27426251|gb|CA937771.1|CA937771
EST:     TAAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGGTTTTCTTCTGGT                         GTATATAGCGATGGA
genomic: TAAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGGTTTTCTTCTGGTgtaagttgat ... gcaataccagGTATATAGCGATGGA