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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTCTTGAAACATATAGATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaattattccctgtttgtgttatttgggcttattcgtggtgaatatttacaaatttgatacaagtgcaagtgtgtctgtatgtgtgtattattat...

Basic information

species Glycine max
transcript GLYMA10G31310.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G31310.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os04g56480.1 (Oryza sativa), 5'ss of exon 9
GCTTTCTTGAAACATATAGATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagt---aattattccctgtttgtgttatttgggcttattcgtggtgaatatttacaaatttgatacaagtgcaagtgtgtctgtatgtgtgtattattat
|||||| |||| ||||| |||||  | || || |  ||||||||||||||||| ||||| ||||| |||||||     |  || |  | ||||  ||| | |  | |  ||  ||||    || |   ||    ||     | ||| | | |   | |  || | |  ||||
GCTTTCCTGAAGCATATTGATTTTGAAGTAGTCCAATGTGCTGTAATTGCAAGCCCAGGTTTTACTAAGgtaatcctcacgtacttacagttttggttttataagttggtt--tggtatccatgtgtcaagcacatgatgatacaattttatgaattta-gtttttgtttat

upper sequence: GLYMA10G31310.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv04s0023g00140.t01 (Vitis vinifera), 5'ss of exon 10
GCTTTCTTGAAACATATAGATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaattattccctgtttgtgttatttgggcttattcgtggtgaatatttacaaatttgatacaagtgcaagtgtgtctgtatgtgtgtattattat-----
|||||| ||||| || | || |||||||| ||||| |||||||| |||||||||||||| || || |||||  || || | |   |||||   |  |      ||  |  | |||     |||| ||  ||  |  | | |     | |   ||     |  | |||||     
GCTTTCCTGAAATATGTGGACTTCAATGTTGTTCGCTGTGCTGTCATTGCAAGTCCAGGTTTCACCAAGgtctgtgataact--ttgtttacttcctcaa---ttgattttagtgtggtattactaagatgtcatgaatcctgaactttacttaaaaacgactcattatttttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193650755|gb|FK595878.1|FK595878
EST:     ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG                         GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
genomic: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: gi|193654999|gb|FK598711.1|FK598711
EST:     ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG                         GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
genomic: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: gi|193509392|gb|FK468844.1|FK468844
EST:     ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG                         GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
genomic: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: gi|9898819|gb|BE607787.1|BE607787
EST:     ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG                         GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
genomic: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: gi|193451064|gb|FK415692.1|FK415692
EST:     ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG                         GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
genomic: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: gi|193488290|gb|FK456113.1|FK456113
EST:     ATGTGGTTCGTTGTGCTGTAATCGCAAGTCCAGGATTTACAAAG                         GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
genomic: ATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: gi|14011604|gb|BG726526.1|BG726526
EST:     GATTTACAAAG                         GATCAGTTTCACCGTCACTTATTGATAGAAGCAGAACGAAGACAGTTGCGA
genomic: GATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: gi|193472093|gb|FK437096.1|FK437096
EST:     ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG                         GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
genomic: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: gi|193483997|gb|FK451966.1|FK451966
EST:     ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG                         GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
genomic: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: gi|23731912|gb|BU764103.1|BU764103
EST:     ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG                         GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
genomic: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: gi|10231661|gb|BE800549.1|BE800549
EST:     ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG                         GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
genomic: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: gi|7690977|gb|AW759112.1|AW759112
EST:     GTAATTGCAAGTCCAGGATTTACAAAG                         GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
genomic: GTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: gi|193516546|gb|FK475684.1|FK475684
EST:     ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG                         GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAAGACAGTTGCG
genomic: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAA-GACAGTTGCG
EST: gi|31471412|gb|CD413440.1|CD413440
EST:     GATTTACAAAG                         GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
genomic: GATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA