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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTTATGAGGAGCAATTGCATCGGATGGAATGCATGGCCCAAGAGCCTGTGCTCTTTGAGGACATATTGTGTCAGATAATTGACATGATTAAACCTGAGgtttgcctttccatatttcttttgatgattgtttgatcttctatcattgtggtgttgtaaaattgttggacaagtgacctcaataatttaaggggggggg...

Basic information

species Glycine max
transcript GLYMA10G30930.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os10g33680.1 (Oryza sativa), 5'ss of exon 10
TTTTTATGAGGAGCAATTGCATCGGATGGAATGCATGGCCCAAGAGCCTGTGCTCTTTGAGGACATATTGTGTCAGATAATTGACATGATTAAACCTGAGgtttgcctttccatatttcttttgatgattgtttgatct-tctatcattgtggtgttgtaaaattgttggacaagtgacctcaataatttaaggggggggg---------------------------------------------------
||| ||||||||||||||||| |||||||| |||||||| ||||| |||||||| |||||||||||||| || ||||| ||||| ||||||  ||| |||||      ||  | |    | ||||||  | || |  || | |   |  ||||  | || |   |||||   || ||  |    ||||  ||       |                                                    
TTTCTATGAGGAGCAATTGCACCGGATGGAGTGCATGGCACAAGAACCTGTGCTTTTTGAGGACATATTATGCCAGATGATTGATATGATTGGACCAGAGgtagcatcttggacagaattattgatgcattttaggcctgtttggaacagtggaat-gtcagcatgttgaggaattgcaccatttaatgcaaaattcctgtgttccaaacaagtccttaaactgaatttgataaatcttttcttttccacag

upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G148323_T01 (Zea mays), 5'ss of exon 10
TTTTTATGAGGAGCAATTGCATCGGATGGAATGCATGGCCCAAGAGCCTGTGCTCTTTGAGGACATATTGTGTCAGATAATTGACATGATTAAACCTGAGgtttgcctttccatatttcttttgatgattgtttgatcttctatcattgtggtgttgtaaaattgttggacaagtgacctcaataatttaaggggggggg
||| || |||||||||||||| || ||||| |||||||| |||||||||||||| |||  ||||||||| || ||||| ||||| ||||||  ||| |||||     ||  ||||  | ||   || |  |||| ||||    |   |    | || |       ||  |||                            
TTTCTACGAGGAGCAATTGCACCGAATGGAGTGCATGGCACAAGAGCCTGTGCTTTTTCTGGACATATTATGCCAGATGATTGATATGATTGGACCAGAGgtaga--ttctcatacatattac-ataaacgttttatctgggcttgata-aatatttt----cctttctacag---------------------------

upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S7_163V6.1 (Physcomitrella patens), 5'ss of exon 10
TTTTTATGAGGAGCAATTGCATCGGATGGAATGCATGGCCCAAGAGCCTGTGCTCTTTGAGGACATATTGTGTCAGATAATTGACATGATTAAACCTGAGgtttgcctttccatatttcttttga---tgattgtttgatc-ttctatcattgtggtgttgtaa--aattgttggacaagtgacctcaataatttaaggggggggg-------------------
|||||| ||||||||| | ||||||||||| |||||||| || |||||||| || |||||||| ||  | ||||| || |  || |||||   |||||  ||  || |||   || |   ||  |   || ||| || |   ||| |  |    ||| | | |   | ||    |  |  | |  | ||   || |  |                          
TTTTTACGAGGAGCAACTTCATCGGATGGAGTGCATGGCTCAGGAGCCTGTTCTTTTTGAGGATATCGTTTGTCAAATGACAGATATGATCGGACCTGCTgtaagcgtttgagtagtctcttctacattggttgcttcactattcgactaaatgggtctcgcattcatttcactgctagttaatgtgaagttttcactgaaacttatcctctactctggctgcag

upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S191_94V6.1 (Physcomitrella patens), 5'ss of exon 11
TTTTTATGAGGAGCAATTGCATCGGATGGAATGCATGGCCCAAGAGCCTGTGCTCTTTGAGGACATATTGTGTCAGATAATTGACATGATTAAACCTGAGgtttgcctttccatatttcttttgatgat-tgtttgatcttctatcattgtggtgttgtaaaatt--gttggacaagtgacctcaataatttaaggggggggg-----------------------
|||||||||||||||||| ||||| |||||||| ||||| |||||  |  |  | ||||| |||||  | ||||| ||   ||| ||||| |||||| ||||     |      ||||   |||||  | ||  | ||   |||  |||   | | | | |||||  ||||   ||       | |  |||| | ||                             
TTTTTATGAGGAGCAATTACATCGAATGGAATGTATGGCACAAGAAGCAATTTTATTTGAAGACATTGTTTGTCAAATGTGTGATATGATCAAACCTAAGgtaattttgcatggatttagattgattgtgtgcataattacctaatattagagagcttttaaattttgttgctaaaaaagttactaggattttatggattcttatgtttcttttgttggtttacag

upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S147_62V6.1 (Physcomitrella patens), 5'ss of exon 10
TTTTTATGAGGAGCAATTGCATCGGATGGAATGCATGGCCCAAGAGCCTGTGCTCTTTGAGGACATATTGTGTCAGATAATTGACATGATTAAACCTGAGgt-----ttgcctttccatatttcttttgat--gattgtttgatc---ttctatcattgtggtgttgtaaaattgttggacaagtgacctcaataatttaaggggggggg-----------------------------
|||||||||||||||| | ||||||||||| |||||||| || |||||||| || |||||||| ||  | ||||| ||    ||||||||   ||||| |||     ||   |||  |  ||| | ||  |  |||  | ||| |    | | |||  || |   || | |  | |||    |    | ||  |  |||    |  |                                
TTTTTATGAGGAGCAACTTCATCGGATGGAGTGCATGGCTCAGGAGCCTGTTCTTTTTGAGGATATCGTTTGTCAAATGGCAGACATGATAGGACCTGCGgtaatcttttggtttgaagctttgtattactccgatattctgaacaggctttctcacggtcgcactgaacaggtcttgcgtgaacttcatcgctgctttgtatgaagttcttgctgaaatttttcttctctggttgcag

upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ32791 (Selaginella moellendorffii), 5'ss of exon 10
TTTTTATGAGGAGCAATTGCATCGGATGGAATGCATGGCCCAAGAGCCTGTGCTCTTTGAGGACATATTGTGTCAGATAATTGACATGATTAAACCTGAGgt---ttgcctttccatatttcttttgatgattgtttgatcttctatcattgtggtgttgtaaaattgttggacaagtgacctcaataatttaaggggggggg
 ||||||||||||||||||||||| ||||| ||| | || ||||| || || ||||| ||||||||| | || ||||| |  ||||||||    || |||||   ||  || |   ||  | |   |    | ||     ||| | | || |     ||| |                                         
CTTTTATGAGGAGCAATTGCATCGCATGGAGTGCCTAGCTCAAGACCCCGTCCTCTTCGAGGACATAGTCTGCCAGATGACGGACATGATCTGCCCAGAGgtgcgttagctgtttgtagct-tccgggctctcgtcaatgcttatgtgatcg----attgcag----------------------------------------

upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ20642 (Selaginella moellendorffii), 5'ss of exon 10
TTTTTATGAGGAGCAATTGCATCGGATGGAATGCATGGCCCAAGAGCCTGTGCTCTTTGAGGACATATTGTGTCAGATAATTGACATGATTAAACCTGAGgt---ttgcctttccatatttcttttgatgattgtttgatcttctatcattgtggtgttgtaaaattgttggacaagtgacctcaataatttaaggggggggg
 ||||| ||||||||||||||||| ||||| ||| | || ||||| || || ||||| ||||||||| | || ||||| |  ||||||||    || |||||   ||  || |   ||  | |   |    | ||     ||| | | ||       ||| |                                         
CTTTTACGAGGAGCAATTGCATCGCATGGAGTGCCTAGCTCAAGACCCCGTCCTCTTCGAGGACATAGTCTGCCAGATGACGGACATGATCTGCCCAGAGgtgcgttagctgtttgtagct-tccgggctctcgtcaatgcttatgtgatc----cattgcag----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574654|gb|CX547629.1|CX547629
EST:     TGCTCTTTGAGGACATATTGTGTCAGATAATTGACATGATTAAACCTGAG                         GATGAGAGTGTTATAACTTTGCGGGACCTGAAAGGTGGTAAACTTTCAGGA
genomic: TGCTCTTTGAGGACATATTGTGTCAGATAATTGACATGATTAAACCTGAGgtttgccttt ... tgctttgcagGATGAGAGTGTTATAACTTTGCGGGACCTGAAAGGTGGTAAACTTTCAGGA
EST: gi|58019797|gb|CX706539.1|CX706539
EST:     TGCTCTTTGAGGACATATTGTGTCAGATAATTGACATGATTAAACCTGAG                         GATGAGAGTGTTATAACTTTGCGGGACCTGAAAGGTGGTAAACTTTCAGGA
genomic: TGCTCTTTGAGGACATATTGTGTCAGATAATTGACATGATTAAACCTGAGgtttgccttt ... tgctttgcagGATGAGAGTGTTATAACTTTGCGGGACCTGAAAGGTGGTAAACTTTCAGGA