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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTAGAACACTTATATTTGCAGGTGAGAGTAGTCCATTCCATGCTGAATCTGTGTACATGAGCACAAAAATGAACCACAAAATCTGCGCACTTGTTGAGgtaggttgtacattcattttatgagtcaacatataacttatactcagcagcctccttaaatctagttgagaagacaaacaaaaatagcatgatcattttgtaatacttgctcag

Basic information

species Glycine max
transcript GLYMA10G30270.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30270.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0030g01790.t01 (Vitis vinifera), 5'ss of exon 10
ATGTAGAACACTTATATTTGCAGGTGAGAGTAGTCCATTCCATGCTGAATCTGTGTACATGAGCACAAAAATGAACCACAAAATCTGCGCACTTGTTGAGgtaggttgtacattcattttatgagtcaacatataacttatactcagcagcctccttaaatctagttgagaagacaaacaaaaa--tagcatgatc--attttgtaatacttgctcag
 || |  || ||||||||||  ||||| ||||||||||||||||||||||||||| |||||||  | |||||| ||   |||| | | |  || ||||||||||| ||         ||| |  ||       | |||||| ||||      ||  |   |||  | || || |||  |       ||| || |||    ||| || ||         
GTGCAAGACGCTTATATTTGTTGGTGAAAGTAGTCCATTCCATGCTGAATCTGTGCACATGAGTGCCAAAATGGACAGAAAAAGCAGTGTTCTCGTTGAGgtaggatgc--------tttctaggttgttgcttcacttattctcaat----tctattgttctcatggataacacatgctgcctcttagaataatctagctttttactatgc------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019580|gb|CX706322.1|CX706322
EST:     CTGTGTACATGAGCACAAAAATGAACCACAAAATCTGCGCACTTGTTGAG                         GTTCAGGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATA
genomic: CTGTGTACATGAGCACAAAAATGAACCACAAAATCTGCGCACTTGTTGAGgtaggttgta ... acttgctcagGTTCAGGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATA
EST: gi|8402399|gb|BE058033.1|BE058033
EST:     CTGTGTACATGAGCACAAAAATGAACCACAAAATCTGCGCACTTGTTGAG                         GTTCAGGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATA
genomic: CTGTGTACATGAGCACAAAAATGAACCACAAAATCTGCGCACTTGTTGAGgtaggttgta ... acttgctcagGTTCAGGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATA
EST: gi|14991050|gb|BI316723.1|BI316723
EST:     CTGTGTACATGAGCACAAAAATGAACCACAAAATCTGCGCACTTGTTGAG                         GTTCAGGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATA
genomic: CTGTGTACATGAGCACAAAAATGAACCACAAAATCTGCGCACTTGTTGAGgtaggttgta ... acttgctcagGTTCAGGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATA