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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCAATAATATCTATGAACTAGTTGGAGTTCCTGTAGTCACAGTGCAACTCAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAGgtaattctctgaattttagggtccatgtagaaactataaagtgatgtacttttgctttgacagttaagattgatctatcctttgatcattattgttcaacttcttcatgcacccttactatctggatgacag

Basic information

species Glycine max
transcript GLYMA10G30220.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30220.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G04870.2 (Arabidopsis thaliana), 5'ss of exon 10
TTTTCAATAATATCTATGAACTAGTTGGAGTTCCTGTAGTCACAGTGCAACTCAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAA-GTCAAGgtaattctctgaattttagggtccatgtagaaactataaagtgatgtacttttgctttgacagttaagattgatctatcctttgatcattattgttcaacttcttcatgcacccttactatctggatgacag
|||||||  |||| |||||||| |  ||||| ||||| || ||||| || |||||||||||||||||||| || ||||| || ||  | |||   |  | | |  |  |||  | |     ||   ||     |   | | | ||| || || || ||||    | |   ||  | | |   ||    |  || ||                                     
TTTTCAACGATATATATGAACTCGAGGGAGTACCTGTGGTTACAGTACAGCTCAGATACAATGGTTGGGTCACGGAGTTACAAGACATTGAACTTGCTAGgttggtaatctagaatcctatgttt-tgggatgatcgtgatg-gatcta-ttctgttttggttttaagtctttgtttttgtgttttggaaaatcgtag-----------------------------------

upper sequence: GLYMA10G30220.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0030g01740.t01 (Vitis vinifera), 5'ss of exon 10
TTTTCAATAATATCTATGAACTAGTTGGAGTTCCTGTAGTCACAGTGCAACTCAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAGgtaattctctgaattttagggtccatgtagaaact-ataaagtgatgtacttttgctttgac-------agttaagattgatctatcctttgatcatta--ttgttcaact--tcttcatgcacccttactatctggatgacag------------------------------------------------
||||  ||||||| ||| |||||||||| || || || |||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||  |||||||| || |||| |  | ||  ||  |   |    || || || |    | || |||| ||  |       ||  | |||| |  | ||||||  |   ||  || |    ||  |  | | | |   |   |  |||     ||                                                 
TTTTTGATAATATTTATAAACTAGTTGGGGTGCCAGTTGTCACAGTGCAACTTAGATACAATGGCTGGGTCACAGAGTTACAGGATCTAGAACGGTCAAGgtgatcctctca--tctaaagtgtagtcactggcttatgaaattgaatgctcttgccttagctttgaagagcaaggattaagatttccttttgtttgtaccttatgtggctaattgttaagaattttatattcctgttcttcattaatcctttgcaagttggttactgaaaattccacattgggactggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10848224|gb|BF070767.1|BF070767
EST:     CTCAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAG                         GCGACTGGGGAAAGCTGTTGGGTTG
genomic: CTCAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAGgtaattctct ... tggatgacagGCGACTGGGGAAAGCTGTTGGGTTG
EST: gi|193313727|gb|FK282916.1|FK282916
EST:     CTCAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAG                         GCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC
genomic: CTCAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAGgtaattctct ... tggatgacagGCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC
EST: gi|192309148|gb|FG999081.1|FG999081
EST:     GGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAG                         GCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC
genomic: GGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAGgtaattctct ... tggatgacagGCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC
EST: gi|208177942|gb|GD975683.1|GD975683
EST:     CTTAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAG                         GCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC
genomic: CTCAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAGgtaattctct ... tggatgacagGCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC
EST: gi|193519439|gb|FK477556.1|FK477556
EST:     CTTAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAG                         GCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC
genomic: CTCAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAGgtaattctct ... tggatgacagGCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC
EST: gi|151411529|gb|EV281340.1|EV281340
EST:     CTCAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAG                         GCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC
genomic: CTCAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAGgtaattctct ... tggatgacagGCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC