Sequence
atgc intronic sequence ATGC exonic sequenceGCTAGGGGCATGAATTGCTTACACACCAGCACACCTACAATTGTTCATCGAGATCTAAAGTCTCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAGgtatatgattgaaaactcatgcaggttatagtatttgcttattctttattattgcataacatgattaaagagcgccataaaaaatagtgcaataaaataa...
Basic information
species | Glycine max |
transcript | GLYMA10G30070.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G30070.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G175563_T01 (Zea mays), 5'ss of exon 9
GCTAGGGGCATGAATTGCTTACACACCAGCACACCTACAATTGTTCATCGAGATCTAAAGTCTCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAGgtatatgattgaaaactcatgcaggttatagtatttgcttattctttattattgcataacatgattaaagagcgccataaaaaatagtgcaataaaataa
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GCCAAAGGTATGAATTGCCTGCACACTAGCATGCCTACAATTGTTCATCGAGATCTGAAATCTCCAAACTTGCTGGTTGACAATAATTGGAATGTTAAGgtgtgtgat------cttgcccacgat-taatatttggccaccaataatcatt-cacatcaatat----atgcaatataacag-----------------
upper sequence: GLYMA10G30070.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G08720.1 (Arabidopsis thaliana), 5'ss of exon 9
GCTAGGGGCATGAATTGCTTACACACCAGCACACCTACAATTGTTCATCGAGATCTAAAGTCTCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAGgtat-atgattgaaaactcatgcaggttatagtatttgcttatt--ctttattattgcataacatgattaaagagcgccataaaaaatagtgcaataaaataa
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GCAATGGGGATGAACTGCTTACACACCAGTACACCGACAATTGTTCATCGTGATCTCAAAACACCAAACCTTTTGGTTGATAACAACTGGAATGTTAAGgtaggaagacttttttcttaagttgtccaacgaatatacttgtttactctaatggtaaataaatagattttgtttttatcttactaaccttgtag--------
upper sequence: GLYMA10G30070.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0030g01440.t01 (Vitis vinifera), 5'ss of exon 9
GCTAGGGGCATGAATTGCTTACACACCAGCACACCTACAATTGTTCATCGAGATCTAAAGTCTCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAGgtatatgattg--------aaaactcatgcaggttatagtat--ttgcttattctttattattgcataacatgattaaagagcgccataaaaaatagtgcaataaaataa
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GCAAAGGGTATGAATTGTTTGCACACCAGTTTACCAACAATTGTTCACCGGGATTTGAAGTCACCAAATCTGCTGGTTGATAAGAACTGGAATGTCAAGgtatggcattgtctttttaacatttcatttagacaacagtaggattgggagttctttttttcttct---cttttcccaagttttgtgttacaattgaagcaat-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|24136021|gb|BU926531.1|BU926531EST: GAGATCTAAAGTCTCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAG GTATGTGATTTT
genomic: GAGATCTAAAGTCTCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAGgtatatgatt ... ctttctacagGTATGTGATTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTAGGGGCATGAATTGCTTACACACCAGCACACCTACAATTGTTCATCGAGATCTAAAGTCTCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAGgtatatgattgaaaactcatgcaggttatagtatttgcttattctttattattgcataacatgattaaagagcgccataaaaaatagtgcaataaaataa
- - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaata