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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGTATTGTTATGTCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCAAgtatgtcttctaaacagatttcctcaagttatgtacactgtccaagtctatgcatacctaaacatattttcacccaactcttgcag

Basic information

species Glycine max
transcript GLYMA10G30020.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 5'ss of exon 9
TATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGTATTGTTATGTCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCAAgtatgtc----ttctaaacagatttcctcaagttatgtacactgtccaagtctat-gcatacctaaacatattttcacccaactcttgcag-------------
|     || |||| ||||||||||| |||||||| ||||||||||| ||||| ||||| || ||||||||||| || |||||||||||| | || || |||||  |     |||| |    || | ||   |||   |     |    |||   | | | | ||||||| |  || ||     | ||                 
TGCTAGATTTGAGCGGCATTCTCACCGTATTCTTCTGTGGTATTGTAATGTCACATTACACTTGGCATAACGTCACAGAGAGTTCAAGAGTTACAACAAAgtaaattataattctcattccatattctactgtttaatgattagcttcagttcgtagaaaaactaaacaaaactt-actggtttgttttgtcctttcacctcag

upper sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os05g05590.1 (Oryza sativa), 5'ss of exon 10
TATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGTATTGTTATGTCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCAAgta-----tgtcttctaaacagatttcct--caagttatgtacactgtccaagtctatgcatacctaaacatattttcacccaac-tcttgcag-----------
|     |||||||||||||||||||||| ||||| | ||| || || ||||| ||||| || |||||||| ||||| || || || || || |||||||||||     |||||  ||| ||| ||| ||  |||    |||    | |   ||   |   |||  ||   ||||     ||  |  |  | ||            
TGCTAGATCTGAGTGGCATTCTCACTGTGTTCTTCTCTGGAATAGTAATGTCACATTACACTTGGCATAATGTGACAGAAAGCTCTAGGATTACTACCAAgtatgtactgtctgataatcagttttactggcaacccttgtggtttcttttagatgaaa-atatttatgtatatggcttcctgatattcttcattcattttacag

upper sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 5'ss of exon 8
TATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGTATTGTTATGTCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCAAgta--tgtcttctaaacagatttcctcaagtt---------atgtacactgtccaagtctatgcatacctaaacatattttcacccaactcttgcag----------------------------------
|   | || ||||||| ||||| || || ||||| ||||||||||| ||||| || |||||||||||||| || || |||||||| ||  |||| ||||||||  | ||||         ||||  |||  |         || | || | |   |   |    ||  | ||| || | ||  |  || |  || |                                   
TGCTTGATTTGAGTGGTATTCTTACGGTGTTCTTCTGTGGTATTGTAATGTCGCACTATACCTGGCATAATGTAACAGAGAGTTCCAGGGTCACAACCAAgtaagtatctttatggtttgtttcagcaaacttattattccattttcatttttttaacttgatgatttc-aaatatgtatttcctgaaattgtgtatcacactgatgcttctctaattgtatactctatag

upper sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G027851_T03 (Zea mays), 5'ss of exon 7
TATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGTATTGTTATGTCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCAAgta-tgtcttctaaacagatttcctcaagttatgtacactgtccaagtctatgcatac---ctaaacatattttcacccaactcttgcag---------
|     |||||||||||||||| || |||||||| || || || || ||||| ||||| |||||||| || ||||| ||||| |||||| |||| |||||||| |   | ||   ||  ||| | | ||| ||||   |||| |   |  ||  |      || |    |||         |  ||             
TGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGTCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattccttgtcattttttcgctagtaatgttt-ctgttctgcttaataaacgaatgctgactgaattccttttgggcctttttcattcacttag

upper sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G063492_T01 (Zea mays), 5'ss of exon 10
TATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGTATTGTTATGTCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCAAgtatgtcttct----aaacagatttcctc----aagttatgtacactg--tccaagtctatgcatacctaa-acatattttcacccaac-tcttgcag
| |   | |||||||| ||||| ||||| ||||| ||||| || || ||||| ||||| || |||||||| ||||| || ||||| ||  | || |||||||||||||| |    |  ||| ||| ||     || |||||     |   ||  |   |||| ||||  |   |  |||||| |    | | ||||||
TGTTGGACCTGAGTGGAATTCTTACTGTCTTCTTCTGTGGAATAGTAATGTCACATTACACTTGGCATAATGTGACAGAAAGTTCTAGGGTTACCACCAAgtatgtcttttctggattcagtttttctagcaaaaattatggttcttacttcttacattatgtatactaattgctgattttctctttccatgttgcag

upper sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G311165_T01 (Zea mays), 5'ss of exon 9
TATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGTATTGTTATGTCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCAAgtatgt----------cttctaaacagatttcctcaagttatgtacactgtccaagtctatgcatacctaaacatattttcacccaactcttgcag
|     || ||||||||||||||||||| || || |||||||| || ||||| || ||||| ||||| || || || || ||||| ||  |||| |||||||| ||          |||||  |  ||  |   |   | ||  |  |  ||   |   |||| ||    ||  || | |        ||   |||
TGCTCGATTTGAGTGGCATTCTCACTGTGTTTTTCTGTGGTATCGTAATGTCACACTATACTTGGCAAAATGTAACAGAAAGTTCGAGGGTCACAACCAAgtaagtagcttcataccttctgtatggacatttgcttttgat-catgcattctttggtaatgcttatgctaatgtactattggatggatc--acag

upper sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G311165_T06 (Zea mays), 5'ss of exon 7
------------------------------------------------------TATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGTATTGTTATGTCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCAAgtatgtcttctaaacagatttcctcaagttatgta-cactgtccaagtctatgcatacctaaacatattttcacccaactcttg-cag----------
                                                       ||| || ||||   |    | | ||||| | ||      |   |  || |  |||| |         ||| |  | |  | ||      | | || |  ||   | || ||     | || ||| | ||  ||  || | ||   || | |   |     | | || | |||| | |  |||| ||           
GCATTCAACCGATCATGAAGTTTCCATTATGATGCTAATGGCTTATTTATCTTACATGCTAGCTGAA-

upper sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 9
TATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGTATTGTTATGTCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCAAgtatgtcttct----aaacagatttcctcaagttatgtacactgtccaagtctatgcatacctaaacatattttcacccaactcttgcag-------------------------------
|||  ||| |||||||||||||||| ||||| || ||||| ||||| ||||| ||||| || ||||| || || || |||||||||||| |||||||||||||||| || |    |||   |||    ||  || ||  ||   |  |  | | |   |    ||| |  |  | ||        |||                                 
TATTCTATTTGAGTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAATGTCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattttcctgaaagcaattggaacattttttggtcaggatttatatttttatttcaaaaaataggtcattactggctgtatgcctgttttaatttctgtctataaaatttccacag

upper sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S169_48V6.1 (Physcomitrella patens), 5'ss of exon 9
TATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGTATTGTTATGTCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCAAgtatgtcttctaaacagatttcctcaagttatgtacactgtccaagtctatgcatacctaaa-catattttcacccaactcttgcag--------------------------------------------------------------------------------
| |  ||  ||||||| |||||| | || |||||||| || ||||| ||||||||||| || ||||||||||| || |||| |||  ||||||| | |||||| || ||    | |   | |||||  || | |      | ||| |   |   |   ||   |  || ||     |||   || ||                                                                                
TTTTCTACTTGAGTGGAATTCTCTCAGTGTTCTTTTGCGGCATTGTAATGTCTCATTACACTTGGCATAACGTCACGGAGAATTCTCGAATCACAAGCAAgtacgtttt----ataatgtacctcagtttctatgggtgttgcaaattagtatttgtttatgtcgaatatttttggaacagatgtagaatttcctcggaactagacccattattcaatgctgatactaagcgtcaatgttatgttgatacgttttggttaattgcag

upper sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S207_23V6.1 (Physcomitrella patens), 5'ss of exon 10
TATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGTATTGTTATGTCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCAAgta--------tgtcttctaaacag--atttcctcaagttatgtacactgtccaagtctatgcatacctaaacatattttcac-ccaactcttgcag---
| |  ||  ||||||| ||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| || || || || ||  |||| || |||| |||        | |||||| ||  |  || ||||    ||   |  |    | ||||   |  |    ||  ||||| || |   |   | |   |    
TTTTCTACTTGAGTGGGATTCTTACTGTCTTCTTTTGTGGCATTGTAATGTCCCACTATACCTGGCATAATGTTACTGAAAGCTCCCGAATAACCACCAGgtaaacaaccatctcttctgaatcggaatgtcctgtcattcaatggaacacctaagttgtttaaattatagtcatatattaatatcctttgtcttaacac

upper sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S31_203V6.1 (Physcomitrella patens), 5'ss of exon 10
TATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGTATTGTTATGTCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCAAgtatgtcttctaaacagatttcctcaagttatgtaca-ctgtccaagtctatgcatacctaaaca--tattttcacccaactcttgcag-----------
| |  || |||||||| ||||| || || ||||||||||| ||||| ||||| || || |||||||||||||| || || || ||| || | ||||||||||| |  |            |    | ||  | | || ||  |  | | | |   |    ||      |  | ||  || |||  |              
TTTTCTACCTGAGTGGAATTCTTACCGTCTTCTTTTGTGGCATTGTAATGTCACACTACACCTGGCATAACGTCACTGAAAGCTCACGAGTAACTACCAAgtaggcatctcttctttcagttgggatgtccttttcatctaacagaatttttatctgttgaataggccacgtacaagcagctcaagatttagtctatttg

upper sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ05720 (Selaginella moellendorffii), 5'ss of exon 8
TATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGTATTGTTATGTCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCAAgtatgtcttctaaacagatttcctcaagttatgtacactgtccaagtctatgcatacctaaacatattttcacccaactcttgcag
| |  || |||||||| || ||||| || ||||||||||| ||||||||||| |||||||| ||||| ||||| || ||||| ||||||||||| ||||||||      | |||    | || |    ||      | |     ||                                        
TGTTCTACCTGAGTGGGATCCTCACAGTCTTCTTTTGTGGCATTGTTATGTCACATTATACATGGCACAACGTCACGGAGAGCTCAAGAATCACAACCAAgtacagtgac-aaatctgtatcttatgttttaacttattcctgcag----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8402106|gb|BE057740.1|BE057740
EST:     TCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCAA                         GCATTCTTTTGCAACCTTGTCATTTGTTGCTGAGATCTTTATC
genomic: TCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCAAgtatgtcttc ... actcttgcagGCATTCTTTTGCAACCTTGTCATTTGTTGCTGAGATCTTTATC
EST: gi|21601836|gb|BQ612167.1|BQ612167
EST:     TCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCAA                         GCATTCTTTTGCAACCTTGTCATTTGTTGCTGAGATCTTTATCTTCCTTTA
genomic: TCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCAAgtatgtcttc ... actcttgcagGCATTCTTTTGCAACCTTGTCATTTGTTGCTGAGATCTTTATCTTCCTTTA