1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTTATAAACTTTGAAATGCCTCAGAGTGTTGCAGGATATGTACATCGAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTGgtgagtttcttggacaacaaatcccccttttcccattacataaattccaaaatgcattattagttgcattttgctctctagcctctcttggtccattgggtattctatcctaggtgtcaccaaggcccaaactgcataatgctgtgtcacttagatatttgtttgtttcatctcag
species | Glycine max |
transcript | GLYMA10G29360.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTG GTTTCCACGGATGAAATGGATACTTTAGAAGAAATAAGATCTTTTGTTGGGEST: gi|58022646|gb|CX709387.1|CX709387
genomic: GAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTGgtgagtttct ... ttcatctcagGTTTCCACGGATGAAATGGATACTTTAGAAGAAATAAGATCTTTTGTTGGG
EST: GAATTGGACGTACAGGAAGAGCATACAATTCTGGTGGTTCTGTCTCTCTG G-TTCCACGGGATGAAATGGATACTTTAGAAGAAATAAGATCTTTTGTTGGEST: gi|58019626|gb|CX706368.1|CX706368
genomic: GAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTGgtgagtttct ... ttcatctcagGTTTCCAC-GGATGAAATGGATACTTTAGAAGAAATAAGATCTTTTGTTGG
EST: GAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTG GTTTCCACGGATGAAATGGATACTTTAGAAGAAATAAGATCTTTTGTTGGG
genomic: GAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTGgtgagtttct ... ttcatctcagGTTTCCACGGATGAAATGGATACTTTAGAAGAAATAAGATCTTTTGTTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTATAAACTTTGAAATGCCTCAGAGTGTTGCAGGATATGTACATCGAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTGgtgagtttcttggacaacaaatcccccttttcccattacataaattccaaaatgcattattagttgcattttgctctctagcctctcttggtccattgggtattctatcctaggtgtcaccaaggcccaaactgcataatgctgtgtcacttagatatttgtttgtttcatctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA