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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaataaatttaatagcatttcatgctttcttcttaagctcatcatattaacgcatttaaaaatccttattgaacacactatactaaaatatattcactgattttcttctctactag

Basic information

species Glycine max
transcript GLYMA10G28530.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28530.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 10
GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaataaatttaatagcatttcatgctttcttct-taagctcatcatattaacgcatttaa--aaatccttattgaacacactatactaaaatatattcactgattttcttctctactag
||| ||||||||||||||||||| || ||||| ||||||||||| || |||||||| || |||||||| || |||||||| || |||||||||||||||  | |||| ||  |||  |||| |   | ||  |||| | | || ||||||       |||||   | |||||| |||                                             
GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaatcaaagtaaatgcatatatagtttgtttctctcatcttatcataaatttttatttattcatatccttgttgccag-----------------------------------------

upper sequence: GLYMA10G28530.2 (Glycine max), 5'ss of exon 10
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 10
GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaataaatttaatagcatttcatgctttcttcttaagctcatcatattaacgcatttaaaaatccttattgaacacactatactaaaatatattcactgattttcttctctactag
||  | || ||||| ||  |||| || || || |||||||| || || || || || ||||| ||||| ||||||||||| ||||| ||||||||||||  |  ||| |           | ||   || |||   |        |   || ||                                                                 
GTCTTAGGTACTCCTACTCGGGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaagagcaatcatccggtatatctctctctctgtctctcttgatgtggctcgttgacag---------------------------------------------------------------

upper sequence: GLYMA10G28530.2 (Glycine max), 5'ss of exon 10
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 10
GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaataaatttaatagcatttcatgctttcttcttaagctcatcatattaacgcatttaaaaatccttattgaacacactatactaaaatatattcactgattttcttctctactag
||  | || ||||| ||  | || || || || |||||||| || || || || || ||||| ||||| ||||||||||| ||||| ||||||||||||  |  ||| |           | ||   || |||   |        |   || ||                                                                 
GTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaagagcaatcatccggtatatctctctctctgtctctcttgatgtggctcgttgacag---------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23729240|gb|BU762707.1|BU762707
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... tctctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|19453358|gb|BM954768.1|BM954768
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... tctctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|5820386|gb|AI988592.1|AI988592
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCATAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... tctctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|31307101|gb|CD392304.1|CD392304
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... tctctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|151395928|gb|EV265805.1|EV265805
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... tctctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|21677182|gb|BQ629533.1|BQ629533
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... tctctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|254344096|gb|GR851006.1|GR851006
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... tctctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|6566727|gb|AW234359.1|AW234359
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... tctctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|9983502|gb|BE657610.1|BE657610
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ANCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... tctctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|5058458|gb|AI736869.1|AI736869
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCT
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... tctctactagATCTTCCATAAGCGCATGCCT
EST: gi|27426035|gb|CA937555.1|CA937555
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... tctctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|16104780|gb|BI892520.1|BI892520
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... tctctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|151411363|gb|EV281174.1|EV281174
EST:     ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... tctctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|214004064|gb|DB984970.1|DB984970
EST:     TTTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ACT-TTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACT
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... tctctactagA-TCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACT
EST: gi|207786927|gb|GD755386.1|GD755386
EST:     CATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: CATCCATGGCACAAGgtatcacaaa ... tctctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|22929643|gb|BU546782.1|BU546782
EST:     ATTATACAGAATTTAANNTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCNTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... tctctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|7926372|gb|AW832398.1|AW832398
EST:     ATTATACAGAATATAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGCTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... tctctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
EST: gi|24206278|gb|BU965531.1|BU965531
EST:     TTTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG                         ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA
genomic: ATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaa ... tctctactagATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTA