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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTCTAGCTAGCACAATTATTAATATGGCACAGGATTTTGTGGGTAGCAACAACATCAATCTTCTTAAACCAAACGGTCAATTTGGTACTCGTAACCTGgtgagatggatctgtatatatgattttgatttaaaacctgcttcgtaacttgtattcatcgtgtaatttgctctttttacag

Basic information

species Glycine max
transcript GLYMA10G11610.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G11610.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv13s0064g00560.t01 (Vitis vinifera), 5'ss of exon 10
AAGTCTAGCTAGCACAATTATTAATATGGCACAGGATTTTGTGGGTAGCAACAACATCAATCTTCTTAAACCAAACGGTCAATTTGGTACTCGTAACCTGgtgagatggatctgtatatatgattttgatttaaaacctgcttcgtaacttgtattc--atcgtgtaat----ttgctctttttacag
 ||||| || ||||| ||||||   ||||||||||| |||||||| ||||||||||| || ||||||  |||||| ||||||||||| |||||| | | |||||     |   || | |     ||  |     |  |  | |  |||||  |||||  | | ||| ||    ||    || ||  ||
GAGTCTTGCCAGCACCATTATTGGCATGGCACAGGACTTTGTGGGCAGCAACAACATAAACCTTCTTCTACCAAATGGTCAATTTGGAACTCGTCATCAGgtgactcaaacaagt-tctgcttcttctacccccatgcatcattttaactgttattcttaccatgttatgtttttaactttgttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208139561|gb|GD937291.1|GD937291
EST:     ACAACATCAATCTTCTTAAACCAAACGGTCAATTTGGTACTCGTAACCTG                         GGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAGCACT
genomic: ACAACATCAATCTTCTTAAACCAAACGGTCAATTTGGTACTCGTAACCTGgtgagatgga ... ctttttacagGGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAGCACT