Sequence
atgc intronic sequence ATGC exonic sequenceTGGAAAATATATTTTGACGGGAGGAGAGGATGATTTAGTTCAAGTTTGGAGTATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACACAACTCATGGgtaagttgcatggtaatcttgactagacaaaaattttaattttttataccataagtaataaattagtatgaggtgagatttggcacaacagtaaggtttt...
Basic information
species | Glycine max |
transcript | GLYMA10G05890.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G05890.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G37160.1 (Arabidopsis thaliana), 5'ss of exon 9
TGGAAAATATATTTTGACGGGAGGAGAGGATGATTTAGTTCAAGTTTGGAGTATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACACAACTCATGGgtaagttgcatggtaatcttgactagacaaaaattttaattttttataccataagtaataaattagtatgaggtgagatttggcacaacagtaaggtttt
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TGGAAAGTACCTTTTGACTGGAGGTGAAGATGACTTGGTTCAAGTGTGGAGTATGGAAGATCGAAAGGTTGTGGCATGGGGTGAGGGACACAATTCGTGGgtaaggttc---ttaaattggagta--tagtgaattacgtatgtaagacaaacactacttgacttatgtgaa---agcttcctcatag------------
upper sequence: GLYMA10G05890.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G37160.2 (Arabidopsis thaliana), 5'ss of exon 9
TGGAAAATATATTTTGACGGGAGGAGAGGATGATTTAGTTCAAGTTTGGAGTATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACACAACTCATGGgtaagttgcatggtaatcttgactagacaaaaattttaattttttataccataagtaataaattagtatgaggtgagatttggcacaacagtaaggtttt
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-----AGTACCTTTTGACTGGAGGTGAAGATGACTTGGTTCAAGTGTGGAGTATGGAAGATCGAAAGGTTGTGGCATGGGGTGAGGGACACAATTCGTGGGTAAGgttc---ttaaattggagtatagtgaa---tta--cgtatgtaagacaaacacta--cttgacttatgtgaaagcttcctcataggtaag-----
upper sequence: GLYMA10G05890.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G53390.1 (Arabidopsis thaliana), 5'ss of exon 9
TGGAAAATATATTTTGACGGGAGGAGAGGATGATTTAGTTCAAGTTTGGAGTATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACACAACTCATGGgtaagttgcatggtaatcttgactagacaaaaattttaattttttataccata-agtaataaattagtatgaggtgagatttggcacaacagtaaggtttt
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TGGAAAGTACATTTTGACTGGAGGTGAAGATGATTTAGTTCAAGTGTGGAGTATGGAGGATCGGAAAGTTGTGGCGTGGGGTGAGGGACATAATTCGTGGgtaaggt---------tcttgatgtcaataagatttcttttatttaacttacacagcacttgactcatgtc-ggaatggttgctctcag------------
upper sequence: GLYMA10G05890.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 9
TGGAAAATATATTTTGACGGGAGGAGAGGATGATTTAGTTCAAGTTTGGAGTATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACACAACTCATGGgtaagttgcatggtaa-tcttgactagacaaaaattttaattttttataccataagtaataaattagtatgaggtgagatttggcacaacagtaaggtttt
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TGGAAAATATATTTTGACTGGAGGTGAGGATGATCTAGTTCAAGTTTGGAGTATGGAAGATCGGAAGGTTGTGGCATGGGGTGAGGGACACAACTCTTGGgtaagtgttctatcaaatgtctgcttgtcataatttcatagacatgattataaccttcatgattatcttttaatggatgtctgccag--------------
upper sequence: GLYMA10G05890.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ38679 (Selaginella moellendorffii), 5'ss of exon 9
TGGAAAATATATTTTGACGGGAGGAGAGGATGATTTAGTTCAAGTTTGGAGTATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACACAACTCATGGgtaagttgcatggtaatcttgactagacaaaaattttaattttttataccataagtaataaattagtatgaggtgagatttggcacaacagtaaggtttt
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TGGGAAGTACGTGTTGGCTGGTGGAGAGGATGATTTAGTCCAAGTCTGGAGCATGGAAGACCGGGCGGTTGTTGCCTGGGGAGAGGGTCACAATTCTTGGgtgcgtttcgacattttattttttattttcatttgacacactcttttactacacacag------------------------------------------
upper sequence: GLYMA10G05890.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ31470 (Selaginella moellendorffii), 5'ss of exon 9
TGGAAAATATATTTTGACGGGAGGAGAGGATGATTTAGTTCAAGTTTGGAGTATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACACAACTCATGGgtaagttgcatggtaatcttgactagacaaaaattttaattttttataccataagtaataaattagtatgaggtgagatttggcacaacagtaaggtttt
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TGGGAAGTACGTGTTGGCTGGTGGAGAGGATGATTTAGTCCAAGTCTGGAGCATGGAAGACCGGGCGGTTGTTGCCTGGGGAGAGGGTCACAATTCTTGGgtgcgtttcgacattttattttttattttcatttgacactctcttttactacacacag------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207766359|gb|GD738715.1|GD738715EST: TGAGGGACACAACTCATGG GTCAGCGGAGTGGCTTTTGATTCATATTGGTCATCCCCTAATTCAAATGAT
genomic: TGAGGGACACAACTCATGGgtaagttgca ... gtttgatcagGTCAGCGGAGTGGCTTTTGATTCATATTGGTCATCACCTAATTCAAATGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGAAAATATATTTTGACGGGAGGAGAGGATGATTTAGTTCAAGTTTGGAGTATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACACAACTCATGGgtaagttgcatggtaatcttgactagacaaaaattttaattttttataccataagtaataaattagtatgaggtgagatttggcacaacagtaaggtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacaaaaa