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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAATCATCTGGATTACTTGGGAGTGCAGGTGGCATGGATATCTGGATCTTGGTTTCTATCAATCTTTGTAAACATAATTCCTTGGGAAAGTGgtgagatttatacggagtgaatcttttcttttaatattacagcattgattttgaattttgtatattcttaaatgttatcttatgccttgtttctcaatcttag

Basic information

species Glycine max
transcript GLYMA10G05490.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G05490.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G37290.1 (Arabidopsis thaliana), 5'ss of exon 9
TTAATCATCTGGATTACTTGGGAGTGCAGGTGGCATGGATATCTGGATCTTGGTTTCTATCAATCTTTGTAAACATAATTCCTTGGGAAAGTGgtgagat-ttatacggagtgaatcttttcttttaatattacagcattgattttgaattttgtatattcttaaatgttatcttatgccttgtt--tctcaatcttag
||||||||||||||||||||||||||||||| |||||||| |||||  | ||||| ||||| || ||||| ||||| |||||||||||| | |||||| | ||||     || ||          ||  |    ||  || |||||   |||  ||    || || |  ||| ||    ||||||  | |  |    ||
TTAATCATCTGGATTACTTGGGAGTGCAGGTTGCATGGATCTCTGGCCCATGGTTCCTATCTATTTTTGTCAACATTATTCCTTGGGAATGCGgtgagttcttatgttatgtcaaaggaaggacatagga----agtctttattttccttttcttag---ctgaagttgtattttcaatcttgttgtttttgagtccag

upper sequence: GLYMA10G05490.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G37290.2 (Arabidopsis thaliana), 5'ss of exon 8
-------TTAATCATCTGGATTACTTGGGAGTGCAGGTGGCATGGATATCTGGATCTTGGTTTCTATCAATCTTTGTAAACATAATTCCTTGGGAAAGTGgtgagat-ttatacggagtgaatcttttcttttaatattacagcattgattttgaattttgtatattcttaaatgttatcttatgccttgtt--tctcaatcttag
       ||||||||||||||||||||||||||||||| |||||||| |||||  | ||||| ||||| || ||||| ||||| |||||||||||| | |||||| | ||||     || ||          ||  |    ||  || |||||   |||  ||    || || |  ||| ||    ||||||  | |  |    ||
GATGCAGTTAATCATCTGGATTACTTGGGAGTGCAGGTTGCATGGATCTCTGGCCCATGGTTCCTATCTATTTTTGTCAACATTATTCCTTGGGAATGCGgtgagttcttatgttatgtcaaaggaaggacatagga----agtctttattttccttttcttag---ctgaagttgtattttcaatcttgttgtttttgagtccag

upper sequence: GLYMA10G05490.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv08s0040g03050.t01 (Vitis vinifera), 5'ss of exon 9
TTAATCATCTGGATTACTTGGGAGTGCAGGTGGCATGGATATCTGGATCTTGGTTTCTATCAATCTTTGTAAACATAATTCCTTGGGAAAGTGgtgagattta---tacggagtgaatcttttc-ttttaatattaca-gcattgattttgaattttgtatat-tcttaaatgttatcttatgc---cttgtttctcaatcttag-----------------------------
||| ||||||||||| ||| |||||||||||||| ||||| |||||| |||||||||| || || ||||| || || ||||| ||||||||||||||| |||    ||   | |  | |  | | || | | | |  | | |||   ||| | |||| | |   |||  |   | || ||   |   | |  || |||| | ||                              
TTAGTCATCTGGATTGCTTAGGAGTGCAGGTGGCCTGGATCTCTGGACCTTGGTTTCTTTCCATTTTTGTGAATATTATTCCATGGGAAAGTGgtgaggtttgcattatataatagagcaatacattctgaaactgaatgaatttcctttaatttttctttgcatctctagattcattttgaacactcctagttgtcaagcatattaaccttgtaatggttcctttaacctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193375747|gb|FK341720.1|FK341720
EST:     TGGATCTTGGTTTCTATCAATCTTTGTAAACATAATTCCTTGGGAAAGTG                         TTCTTCGAGTTTGGGATGTGCTACTATTTGAAGGGAACCGTGTTATGCTAT
genomic: TGGATCTTGGTTTCTATCAATCTTTGTAAACATAATTCCTTGGGAAAGTGgtgagattta ... tcaatcttagTTCTTCGAGTTTGGGATGTGCTACTATTTGAAGGGAACCGTGTTATGCTAT
EST: gi|193493307|gb|FK460057.1|FK460057
EST:     TGGATCTTGGTTTCTATCAATCTTTGTAAACATAATTCCTTGGGAAAGTG                         TTCTTCGAGTTTGGGATGTGCTACTATTTGAAGGGAACCGTGTTATGCTAT
genomic: TGGATCTTGGTTTCTATCAATCTTTGTAAACATAATTCCTTGGGAAAGTGgtgagattta ... tcaatcttagTTCTTCGAGTTTGGGATGTGCTACTATTTGAAGGGAACCGTGTTATGCTAT