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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGTGTTGAATGGAATAAGTTGTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTGAAAAGTTTGATGAGgtattcaagtcccttatattcttgttttgtgtagcttgttgtcggccactttccttgttcatattttctcattttgtcttttgcatttgtag

Basic information

species Glycine max
transcript GLYMA10G04410.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G04410.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os10g33640.1 (Oryza sativa), 5'ss of exon 9
CAAAGGTGTTGAATGGAATAAGTTGTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTGAAAAGTTTGATGAGgtattcaagtcccttatattcttgttttgtgtagcttgttgtcggccactttccttgttcatattttctcattttgtcttttgcatttgtag
 |  || || |||||| | || || ||| |||| ||||| |||| |   ||| | |||| ||||||||||||||||||||||||||| |||||||| |||||    | |   | | | || | |  |   | |  |   | ||    | ||    |     | | |||  ||  ||| |||||||       
TAGTGGAGTAGAATGGGACAAATTATATGAAATAGAAGCAGCATATCAACCTCAAGTCACTGATGAGTTAGATACTCAGAATTTTGAGAAGTTTGAAGAGgt---taggggtcgtttcttttggcctaaaggaattcagtttcaataagttggtataaatgt-tattcctatggtgtgttttgcag------

upper sequence: GLYMA10G04410.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv07s0005g03690.t01 (Vitis vinifera), 5'ss of exon 9
CAAAGGTGTTGAATGGAATAAGTTGTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTGAAAAGTTTGATGAGgtattcaagtcccttatattcttgtt----ttgtgtagcttgttgtcggccactttcc----ttgttcat--attttctcattttgtcttttgcatttgtag
  |||||  ||||||| |||   | ||||  |||||||||||||||||||| |||||||  ||||| |||||||||||||||||||||||||| || |||||||| |  | |  |||  | ||| |    |||||   |   ||||  |    |||      ||| | ||  | ||| | |   | | || ||  |||| ||
TGAAGGTACTGAATGGGATAGACTATATCTTATGGAAGCTGCATTTATTCCCGAGGTCAGAGATGAATTAGATACTCAGAATTTTGAAAAGTTCGAAGAGgtattgatatgctctattcttttgctgatcttgtgccacaacttgtttggagttttttcatgttgcttatctactttttgagcctattttatgggtttgcag

upper sequence: GLYMA10G04410.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S87_129V6.1 (Physcomitrella patens), 5'ss of exon 9
CAAAGGTGTTGAATGGAATAAGTTGTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTGAAAAGTTTGATGAGgtattcaagtccctt--------atattc--ttgttttgtgtagcttgttgtcggccactttccttgttcatattttctcattttgtcttttgcatttgtag
||||||  |   |||| | | ||| ||| ||||||| || || ||||  || || || || |||||||| ||||||||||||||||| || ||||| |||||   ||   |            | ||||  ||   ||    | |    | |  | |||| |    |||  ||   ||| ||  |   |||   ||   |  
CAAAGGATTGCCATGGGAAAGGTTATATGAAATGGAGGCCGCTTTTAAACCGGAAGTGAAAGATGAGTTGGATACTCAGAATTTTGAGAAATTTGAAGAGgttaacagtccttcctatctagaacattcgtttacctttcaaatcagaatctttggcactcttagagttgttaaactctgatgataattttcaaatagtt--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9986562|gb|BE660670.1|BE660670
EST:     TGAGGNCAATGATCAAGTTAGATACTCAGAATTTTGAAAAGNTTGATGAG                         TCTGACAGCCAAACTCAATCATCTTCAANATCTGGTCCATGGAGGAAG
genomic: TGAGGTCAATGATGA-GTTAGATACTCAGAATTTTGAAAAGTTTGATGAGgtattcaagt ... gcatttgtagTCTGACAGCCAAACTCAATCATCTTCAAGATCTGGTCCATGGAGGAAG