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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAGgtaaggatggagttctgtttcttaaaagaatacaatttttacttaggcacatactgcatttaattttttaatggtgactaaggacttcgatattttaata...

Basic information

species Glycine max
transcript GLYMA10G03740.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16342973|gb|BI968568.1|BI968568
EST:     ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG                         TTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
genomic: ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAGgtaaggatgg ... gtaatttcagTTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
EST: gi|10254098|gb|BE821864.1|BE821864
EST:     ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG                         TTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
genomic: ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAGgtaaggatgg ... gtaatttcagTTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
EST: gi|15001224|gb|BI322038.1|BI322038
EST:     ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG                         TTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
genomic: ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAGgtaaggatgg ... gtaatttcagTTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
EST: gi|12496411|gb|BG047051.1|BG047051
EST:     ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG                         TTACCTGGCGGGTTGTCACTGAAT
genomic: ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAGgtaaggatgg ... gtaatttcagTTACCTGGCGGGTTGTCACTGAAT
EST: gi|11411574|gb|BF423585.1|BF423585
EST:     ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG                         TTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
genomic: ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAGgtaaggatgg ... gtaatttcagTTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
EST: gi|23064089|gb|BU578862.1|BU578862
EST:     ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG                         TTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
genomic: ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAGgtaaggatgg ... gtaatttcagTTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
EST: gi|192295550|gb|FG988124.1|FG988124
EST:     ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG                         TTACCTGGCGGGTTGTCACTGAATTTA
genomic: ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAGgtaaggatgg ... gtaatttcagTTACCTGGCGGGTTGTCACTGAATTTA
EST: gi|209705614|gb|BW673583.1|BW673583
EST:     ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG                         TTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
genomic: ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAGgtaaggatgg ... gtaatttcagTTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
EST: gi|6454987|gb|AW185670.1|AW185670
EST:     ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG                         TTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
genomic: ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAGgtaaggatgg ... gtaatttcagTTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
EST: gi|209725780|gb|BW659911.1|BW659911
EST:     ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG                         TTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
genomic: ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAGgtaaggatgg ... gtaatttcagTTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
EST: gi|209698024|gb|BW675643.1|BW675643
EST:     ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG                         TTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
genomic: ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAGgtaaggatgg ... gtaatttcagTTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
EST: gi|22927402|gb|BU544541.1|BU544541
EST:     ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG                         TTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
genomic: ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAGgtaaggatgg ... gtaatttcagTTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
EST: gi|8825678|gb|BE209471.1|BE209471
EST:     ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG                         TTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
genomic: ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAGgtaaggatgg ... gtaatttcagTTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
EST: gi|22523475|gb|BU082286.1|BU082286
EST:     ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG                         TTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
genomic: ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAGgtaaggatgg ... gtaatttcagTTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
EST: gi|192322570|gb|FK014691.1|FK014691
EST:     ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG                         TTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA
genomic: ATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAGgtaaggatgg ... gtaatttcagTTACCTGGCGGGTTGTCACTGAATTTAGCGTGGTTGTCAAATTGTTGGGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAGgtaaggatggagttctgtttcttaaaagaatacaatttttacttaggcacatactgcatttaattttttaatggtgactaaggacttcgatattttaata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG