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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGAAGTTGTGAACAGGCTTACAACAGCAGTTGAACTACCGTCTCAATTCATTCACATGTACATAACTAATTGTATAGCATCCTGTGTGGGCATCAAGgtaagcctttattttctgcacaacaaacatttgatttaaacttgatgataacatttgattttatgcaagtttatatgggtttaatgaatttaccaaagtt...

Basic information

species Glycine max
transcript GLYMA10G00610.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G00610.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G18420.3 (Arabidopsis thaliana), 5'ss of exon 10
AATGGAAGTTGTGAACAGGCTTACAACAGCAGTTGAACTACCGTCTCAATTCATTCACATGTACATAACTAATTGTATAGCATCCTGTGTGGGCATCAAGgtaagcctttattttctgcacaacaaacatttgatttaaacttgatga--taacatttgattttatgcaagtttatatgg----gtttaatgaatttaccaaagtt---
||||||||||||||| ||||| ||||| ||||||||||| ||     | ||||| |  |||||||| |||||||| ||| | || |||| |  |   ||||||         ||    || | |   | ||||||||    ||    |  ||| |      ||| |   ||| |  ||       |   || |  ||     |      
AATGGAAGTTGTGAATAGGCTCACAACTGCAGTTGAACTTCCCAAGGACTTCATACGGATGTACATCACTAATTGCATATCGTCTTGTGAGAACGCTAAGgta---------ttaaaacaaagcgtccttttgatttcccgttaggtacttaaaacaaagctttctatgagtatccataacgccatcctataatcttgtgtgaaaaaac

upper sequence: GLYMA10G00610.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv07s0130g00310.t01 (Vitis vinifera), 5'ss of exon 10
AATGGAAGTTGTGAACAGGCTTACAACAGCAGTTGAACTACCGTCTCAATTCATTCACATGTACATAACTAATTGTATAGCATCCTGTGTGGGCATCAAGgtaagc--ctttattttctgcacaacaaacatttgatttaaacttgatgataacatttgattttatgcaagtttatatgggtttaatgaatttaccaaagtt-
||||||||| || ||||||||||| ||||| |||||||| ||  |  ||||  | |||||||||||||||||||||||| |||| |||     |||||||||      ||| | |||     |    | ||||| || |    |   ||| ||     ||||| |   || ||   |  || || ||   |   |   |||  
AATGGAAGTCGTTAACAGGCTTACTACAGCGGTTGAACTTCCCACCGAATTTGTACACATGTACATAACTAATTGTATATCATCTTGTCAAAACATCAAGgtccttttcttcactttgctttctgatagcattttatattg-ttccttgacaa--acggatttcagcaaaattctgactggatttatcgctgggcttgagtaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14126522|gb|BG790960.1|BG790960
EST:     TCATTCACATGTACATAACTAATGGTGTAGCATCCTGTGTGGGCATCAAG                         GATAAATACATGCAGAACCGGCTTGTGAGACTTGCCTGTGTTTTTCTGCAA
genomic: TCATTCACATGTACATAACTAATTGTATAGCATCCTGTGTGGGCATCAAGgtaagccttt ... tttttctcagGATAAATACATGCAGAACCGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAA