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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCATGGTACAAAGAACGTCTCCTCTATCAGTCTTCTCTTGGTTCCCTCATGGTCATCATTCTTATCAGAACTATACAGTATAATTTGTCTAAACTTCGGgtatgaatcttaatgcaagtgggatcatcaatttaactactccatatatttaagctgccattttctgttgactgactatttgataagaagtttcatatca...

Basic information

species Glycine max
transcript GLYMA10G00550.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G00550.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G04200.1 (Arabidopsis thaliana), 5'ss of exon 10
TCCATGGTACAAAGAACGTCTCCTCTATCAGTCTTCTCTTGGTTCCCTCATGGTCATCATTCTTATCAGAACTATACAGTATAATTTGTCTAAACTTCGGgtatgaatcttaatgcaagtgggatca-tcaatttaactactccatata-------tttaagctgccattttctgttga--ctgactat---ttgataagaa--gtttcatatca-------------------------------------------------------------
 ||||||||||| || | ||||||  ||||| | |||||||||||| | |||||||| ||||| || |||||  | ||| ||||  | |||||||||||||||||  | |  || ||  |   | || | ||  |   |  | || | |       ||||   || || |||  || |   ||   |     || ||||||    | |||  | |                                                             
GCCATGGTACAAGGAGCATCTCCTTCATCAGACGTCTCTTGGTTCCTTAATGGTCATTATTCTCATAAGAACAGTGCAGCATAACCTTTCTAAACTTCGGgtatggctttagattcatatcttagcaatgaaaatgtttttttcagacaaattcgttttagtttggcagtttgggtaggtgctaggtgcagctttataagagtgatgtcacgttaaaatcttagccagatatcaaaataacttttgtgacaaattctgtttcttgggctgttacag

upper sequence: GLYMA10G00550.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 10
TCCATGGTACAAAGAACGTCTCCTCTATCAGTCTTCTCTTGGTTCCCTCATGGTCATCATTCTTATCAGAACTATACAGTATAATTTGTCTAAACTTCGGgtatgaatcttaat----gcaagtgggatcatca--atttaactactccatatatttaagctgccattttctgttgactgactatttgataagaagtttcatatca
|||||||||||||||||| |||||  | ||| | ||||||||||| || |||||||| ||||| || || ||| |  | |||||  | ||||| || ||||||||| |   | |      |  | |  ||||    |  ||| ||||       ||   |      ||    |  |||||  | |||||   ||  |         
TCCATGGTACAAAGAACGCCTCCTTCACCAGACCTCTCTTGGTTCTCTGATGGTCATAATTCTCATTAGGACTGTGAAATATAACCTATCTAAGCTGCGGgtatgacttgaagttttcatatttagattcatggtcaagtaattactgtcatctttcttgtgattgttaaaagcagactgtttctttgacttgagatcaa------