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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCAATGCCCAGGTTGCAAATGCAAAAACACCTGGGGGAGTTACGAGTGCAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTGgtgaggcttttttagttttcctatcttttttctttaccactttcaaaattgcattgctaaatgaattgtttttgtgtaatcatttaatgtaatgctagtt...

Basic information

species Glycine max
transcript GLYMA09G41070.3
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20812568|gb|BQ297046.1|BQ297046
EST:     CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTG                         GTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG
genomic: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTGgtgaggcttt ... ataaatgcagGTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG
EST: gi|6724792|gb|AW309191.1|AW309191
EST:     CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTG                         GTGAATATTCTGCTTCAGTGTTGAATATCTGCGTGATTATCCTCGTTTTGG
genomic: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTGgtgaggcttt ... ataaatgcagGTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG
EST: gi|51341493|gb|CO982810.1|CO982810
EST:     CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTG                         GTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG
genomic: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTGgtgaggcttt ... ataaatgcagGTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG
EST: gi|254344698|gb|GR851288.1|GR851288
EST:     CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTG                         GTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG
genomic: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTGgtgaggcttt ... ataaatgcagGTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG
EST: gi|254344697|gb|GR851287.1|GR851287
EST:     CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTG                         GTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG
genomic: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTGgtgaggcttt ... ataaatgcagGTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG
EST: gi|10255066|gb|BE822832.1|BE822832
EST:     CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTG                         GTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG
genomic: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTGgtgaggcttt ... ataaatgcagGTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG
EST: gi|151407222|gb|EV277037.1|EV277037
EST:     CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTG                         GTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG
genomic: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTGgtgaggcttt ... ataaatgcagGTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG