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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGgttagcaattctttactccccatttgttcccggagtatattcaatttgtaattgataaatagttccagtcagagatctgattgattatttatatcag

Basic information

species Glycine max
transcript GLYMA09G40150.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G40150.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os10g37740.1 (Oryza sativa), 5'ss of exon 10
ATCTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGgttagcaattctttactccccatttgttcccggagtatattcaatttg--taattgataaatagttccagtcagagatctgattgattatttatatcag
|| ||||| |||||||| ||||||||||| | ||||||||||||||| ||  | ||||| || || |||||||||||||| || |||||||| |||||| |    ||| || | ||       |   |   || | | |  |    |  |    ||||  |||||     ||                       
ATTTTGGGTACACCAACTAGAGAAGAAATCAGGTGCATGAATCCAAACTATTCTGAATTCAAATTCCCTCAGATAAAAGCTCATCCATGGCACAAGgttggtggatctctaattccatagcactttagttctacactgatgtaaccttctcacaaaatttttccaactgcag-----------------------

upper sequence: GLYMA09G40150.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G109624_T01 (Zea mays), 5'ss of exon 10
ATCTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGgttagcaattctttactccccatttgttcccggagtatattcaatttgtaattgataaatagttccagtcagagatctgattgattatttatatcag
|| ||||| || ||||| ||||| ||||| | ||||||||||||||||||  | ||||| ||||| |||||||||||||| || |||||||| ||||||||  ||   | |   |     ||||       |  |||  |  ||||||   |  | |    ||   |    | |||||  |  | ||      
ATTTTGGGTACTCCAACAAGAGAGGAAATCAGGTGCATGAATCCAAATTATTCTGAATTCAAGTTCCCTCAGATAAAAGCCCATCCATGGCACAAGgttagggatctctaatctctgtggtgttttt----ttcatttcagctgtaatgagttgacaagctcacctaag--tttgattc-tcgtgtag-----

upper sequence: GLYMA09G40150.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G131853_T01 (Zea mays), 5'ss of exon 10
ATCTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGgttagcaattctttactccccatttgttcccggagtatattcaatttgtaattgataaatagttccagtcagagatctgattgattatttatatcag
|| ||||| || ||||| ||||| || || | ||||||||||||||||||  ||||||| ||||| |||||||||||||| || |||||||| ||||||||  ||   | |   || |  ||||       |  |||  |  ||||     |  | |   ||||       |  | | |||| |   | |   
ATTTTGGGTACTCCAACAAGAGAGGAGATCAGGTGCATGAATCCAAATTATTCCGAATTCAAGTTCCCTCAGATAAAAGCCCATCCATGGCACAAGgttagggatctctaatctccaaggtgttttt----ttcatttgagctgtagccagttgaaa---ccagctcaccctaagttcgatt-tccgtgtag-

upper sequence: GLYMA09G40150.1 (Glycine max), 5'ss of exon 10
lower sequence: AT4G00720.1 (Arabidopsis thaliana), 5'ss of exon 10
ATCTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGgttagc-aattctttac---tccccatttgttcccggagtatattcaatttgtaattgataaatagttccagtcagagatctgattgattatttatatcag
||  | || || || || ||||||||||||  ||| |||||||| |||||||| || || ||||||||||| || ||||| ||||| ||||| |||||| |  || |  |  |   | ||  |||| | |  | |  | ||||| |   | || ||  |   |   | ||                           
ATTCTTGGGACGCCTACAAGAGAAGAAATACGGTGTATGAATCCGAATTACACAGAGTTCAAGTTTCCTCAAATCAAAGCTCACCCGTGGCACAAGgtttgttaaataatcgcaggtgcctctttggtgcgtgtgcttgttcaaatgaaatttaatgtagcatataactcttcag----------------------

upper sequence: GLYMA09G40150.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv15s0048g02010.t01 (Vitis vinifera), 5'ss of exon 10
ATCTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGgtt----agcaattctt-----tactccccatttgttcccggagtatattcaatttgtaattgataa-atagttccagtcagagatctgattgattatt-tatatcag
||  |||| ||||| |||||||||||||| ||||||||||||||||||||||  || || |||||||| || || ||||| ||||||||||| ||||||    | |||||||      ||   |  || || | || ||  ||     || | | ||  || | ||   |  || || |    |  || | | || | |  |||
ATTCTGGGTACACCCACCAGAGAAGAAATTAAGTGCATGAATCCAAATTACAATGAGTTCAAGTTTCCACAAATCAAAGCTCACCCATGGCACAAGgtttgtcaacaattctaaagggtagatcatatctgctgcccga-catcactgatatttgataaattatatttctatagccaaaagcttatttaagttttgttttccag

upper sequence: GLYMA09G40150.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
ATCTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGgt-tagcaattctttactccccatttgttcccggagtatattcaatttgtaatt-gata--aatagttccagtcagagatctgattgattatttatatcag--------------------------------------------------------------------------------------------
 | || || ||||| ||  | || || ||||||||||||||||| || ||||| || || ||||||||||| || || || ||||| ||||| ||||| | |    | | |       |  | ||    | |    |  | | | ||||| ||||  |||  | |  |||   ||| |   ||||| |  || |                                                                                               
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtg---gtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag

upper sequence: GLYMA09G40150.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 10
ATCTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGgttag--caattctttactccccatttgttcccggagtatattcaatttgtaattgataaatagttccagtcagagatctgattgattatttatatcag
 |||| || || || ||  | || ||||| || |||||||||||||| ||||| || |||||||| |||||||| ||||| || || ||||| ||||| ||  ||||  |    |     | |  || | |  | | || |   |||   |  |  | ||                                   
GTCTTAGGTACTCCTACTCGGGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaagagcaatcatccggtatatctct-ctctctgtctctcttga---tgtggctcgttgacag-----------------------------------

upper sequence: GLYMA09G40150.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 10
ATCTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGgttag--caattctttactccccatttgttcccggagtatattcaatttgtaattgataaatagttccagtcagagatctgattgattatttatatcag
 |||| || || || ||  | || ||||| || |||||||||||||| ||||| || |||||||| |||||||| ||||| || || ||||| ||||| ||  ||||  |    |     | |  || | |  | | || |   |||   |  |  | ||                                   
GTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaagagcaatcatccggtatatctct-ctctctgtctctcttga---tgtggctcgttgacag-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18734580|gb|BM528264.1|BM528264
EST:     ATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAG                         GTTTTTCACAAGAAGATGCCTTCAGAAGCAGTGGATCTAGTGTCAAGGATG
genomic: ATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGgttagcaatt ... tttatatcagGTTTTTCACAAGAAGATGCCTTCAGAAGCAGTGGATCTAGTGTCAAGGATG
EST: gi|15337648|gb|BI498304.1|BI498304
EST:     ATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAG                         GTTTTTCACAAGAAGATGCCTTCAGAAGCAGTGGATCTAGTGTCAAGGATG
genomic: ATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGgttagcaatt ... tttatatcagGTTTTTCACAAGAAGATGCCTTCAGAAGCAGTGGATCTAGTGTCAAGGATG
EST: gi|209727344|gb|BW655275.1|BW655275
EST:     ATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAG                         GTTTTTCACAAGAAGATGCCTTCAGAAGCAGTGGATCTAGTGTCAAGGATG
genomic: ATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGgttagcaatt ... tttatatcagGTTTTTCACAAGAAGATGCCTTCAGAAGCAGTGGATCTAGTGTCAAGGATG