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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAAAGCATGGTGTAGCAGTCATGACAATAAGAGAATTGTTTGAATTTATTGTCGATGCATCCATTACTGATGATGCCGTGGATAGTTACCTAGAAGAGgtatttggtatttgttttattattgttcatactttttgaataacttaaaagagatcttaatggttttcaaaatatttctag

Basic information

species Glycine max
transcript GLYMA09G39750.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39750.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv17s0000g01390.t01 (Vitis vinifera), 5'ss of exon 10
TAAAAAGCATGGTGTAGCAGTCATGACAATAAGAGAATTGTTTGAATTTATTGTCGATGCATCCATTACTGATGATGCCGTGGATAGTTACCTAGAAGAGgtatttggtatttgttttattattgttcatactttttgaataacttaaaagagatcttaatggttttcaa---aatatttctag
|||||| ||||||||||| || ||||||||  ||||| ||||||| || || || ||| || |||||||||||||  | ||||||  ||| || ||| |||| |      |||| ||  ||||  | || | ||||   | ||     |||||||||  ||| |         ||| |||  ||
TAAAAAACATGGTGTAGCTGTTATGACAATTCGAGAACTGTTTGATTTCATAGTTGATCCAACCATTACTGATGAGTCAGTGGATGATTATCTGGAACAGgttt-----gtttggttgtttatgctgcagaattttgctagaaaacggaagagatctccatgataacggctttaatcttttcag