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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGTTGAACTATTTTGGGTCACCTGTGGCCAGTCTGAGGATAAAACAAATTTGATTGAGGAAGTTTCATGGTTAGATTATGGTCATCGAGGCATGCAGgtaaactgttaaggtctttcttattcactgtatgtacatccctgaactttactaggtttatgactcttaattcaccctctagtgtatttcctttttacttgtcttgtatttttttacattgttgcag

Basic information

species Glycine max
transcript GLYMA09G39270.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39270.2 (Glycine max), 5'ss of exon 10
lower sequence: AT3G61480.1 (Arabidopsis thaliana), 5'ss of exon 10
TTCAGTTGAACTATTTTGGGTCACCTGTGGCCAGTCTGAGGATAAAACAAATTTGATTGAGGAAGTTTCATGGTTAGATTATGGTCATCGAGGCATGCAGgtaa-------actgttaaggtctttcttat--tcactgtatgtaca-tccctgaactttactaggtttatgactcttaattcaccctctagtgtatttcctttttact---tgtctt---gtatttttttacattgttgcag--------------------------------------------------
 |||||||||||||||||||| || ||||| || || || || || |||||| |  | |||||||| || ||| |||||||||| || ||||| ||||||||||        ||   ||| |  || ||||  ||||| |   |    | | |    |||  |   ||| |   | ||  ||  | |  ||  |  || || |    ||   |||||    |||  | | |   |  |  | |                                                  
CTCAGTTGAACTATTTTGGGTGACATGTGGTCAATCGGAAGAGAAGACAAATCTTGTCGAGGAAGTATCTTGGCTAGATTATGGACACCGAGGAATGCAGgtaattcctctgcttcaaagctgcttgttatgctcacttttcttcttcttcttttttttttttttttttttcttttttctttttctcgttatagggttgccctgcccctaagtgtctgacagtaactctctgtttgatccctgtcttttgtaactttttttgatttgtttaacgctgagattctatattatag

upper sequence: GLYMA09G39270.2 (Glycine max), 5'ss of exon 10
lower sequence: AT5G28350.1 (Arabidopsis thaliana), 5'ss of exon 10
TTCAGTTGAACTATTTTGGGTCACCTGTGGCCAGTCTGAGGATAAAACAAATTTGATTGAGGAAGTTTCATGGTTAGATTATGGTCATCGAGGCATGCAGgtaaactgttaaggtctttcttattcactgtatgtacatccctgaactttactaggtttatgactcttaattcaccctc--tagtgtatttcctttttact---tgtctt---gtatttttttacattgttgcag------------------------------------------------
 |||||||||||||||||||| || ||||| || || ||||| || |||||| |  | ||||||||||| ||| |||||||||| || ||||| ||||||||||    |     ||     |  |   | |    || |  ||     ||  |   ||| |   | ||   |    |||  ||  |  || || |    ||   |||||    |||  | | ||  |  |  | |                                                
CTCAGTTGAACTATTTTGGGTGACATGTGGTCAATCGGAGGAGAAGACAAATCTTGTCGAGGAAGTTTCTTGGCTAGATTATGGACACCGAGGAATGCAGgtaattcctctgcttcaaagctgcttgttatgctcacttttcttcttcttctttttttttttttttttttctttttctcgttatagggttgccctgcccctaagtgtctgacagtaactctctatttgatccctgtcttttttatttttttatttgttataacgctgagattctatattgcag

upper sequence: GLYMA09G39270.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv15s0046g01890.t01 (Vitis vinifera), 5'ss of exon 10
TTCAGTTGAACTATTTTGGGTCACCTGTGGCCAGTCTGAGGATAAAACAAATTTGATTGAGGAAGTTTCATGGTTAGATTATGGTCATCGAGGCATGCAGgtaa---actgttaaggtctttcttattcactgtatgtacatccctgaactttactaggtttatgactcttaattcaccctctagtgtatttcctttttacttgtcttgtatttttttacattgttgcag--------------
||| |||||| |||||||||| |||||||| || || ||||| ||||| ||  | |||||||||||||||||||| |||||||| ||| |||| ||||||||||   |||| |  ||||| | | | |   || |     || ||  |  ||| |||| ||||  | |||  |     |   |||  |||||| || ||||||||||  |||   ||   || |||| |               
TTCTGTTGAATTATTTTGGGTTACCTGTGGTCAATCAGAGGAAAAAACGAACCTAATTGAGGAAGTTTCATGGTTGGATTATGGCCATAGAGGAATGCAGgtaatagactgctctggtctatatcagtttttgaa-----atacc--agtttttctagcttta-aattctgcacctctctattagcctatttcattcttacttgtctgatatagatt---atggttggaagcttatcatttcag