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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGCTGCCTCTGTATGCCCTAATGAATCTTGTAGGGTAATTGAAGTCCCACAAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAGgtatgttttacaatccttttttttatagcatttttactgctttattttatccttacaacagtgctacatttaacaaagggaaatcttcctatattagtgt...

Basic information

species Glycine max
transcript GLYMA09G38460.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207768257|gb|GD739941.1|GD739941
EST:     CACAAGTTGAGGACTGTCTTCAACCTGTAATTAATGTGGTTCCATTACAG                         TTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTGG
genomic: CACAAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAGgtatgtttta ... tccgatgcagTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTGG
EST: gi|208141306|gb|GD936096.1|GD936096
EST:     CACAAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAG                         TTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTGGACCAGCCT
genomic: CACAAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAGgtatgtttta ... tccgatgcagTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTGGACCAGCCT
EST: gi|192325841|gb|FK018063.1|FK018063
EST:     CACAAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAG                         TTATTGGCATATCATCTCACTGTTCTCAGGG-ACATAACGTGGACCAGCCT
genomic: CACAAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAGgtatgtttta ... tccgatgcagTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTGGACCAGCCT
EST: gi|207844864|gb|GD815805.1|GD815805
EST:     CACAAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAG                         TTATTGGCATATCATCTCACTGTTC
genomic: CACAAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAGgtatgtttta ... tccgatgcagTTATTGGCATATCATCTCACTGTTC
EST: gi|58025101|gb|CX711842.1|CX711842
EST:     CACAAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAG                         TTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTGGACCAGCCT
genomic: CACAAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAGgtatgtttta ... tccgatgcagTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTGGACCAGCCT
EST: gi|209696471|gb|BW664020.1|BW664020
EST:     CACAAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAG                         TTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTGGACCAGCCT
genomic: CACAAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAGgtatgtttta ... tccgatgcagTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTGGACCAGCCT