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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGgtgatgaaatattattgaatcttatcagctatcatgcataatgcactctcaattctgactgattgtttttcttgaacttctgtacag

Basic information

species Glycine max
transcript GLYMA09G38110.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38110.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 10
ATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGgtgatgaaatat---tattgaatcttatcagct----atcatgcataatgcactctcaa---ttctgactgattgtttttcttgaacttctgtacag---
|||||||| ||||| ||||| ||||| || || |||||  | ||||| ||  ||  |||||| ||||| |||||||| |||||||| ||||||||||||||| |   | | |   | |||| |  | |||| |    ||||     |   |  |||  |   ||||       ||||     | |  || |         
ATGTATACTGATCTGGCAACCATATATGAGCGAGCTGGGCGTATTGAAGGAAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgactgtttttgttgatttatttcagttttatatcaccaccacaactatcttgagtattctataaacatgttgcgtataagatttttcctgaagt

upper sequence: GLYMA09G38110.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G181151_T01 (Zea mays), 5'ss of exon 10
ATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGgtgatgaaatattattgaatcttatcagctatcatgcataatgcactctcaattctgactgattgtttttctt-gaacttctgtacag---------------
|||||||| ||||| ||||||||||| || ||||||||  | ||||| ||  ||| ||| || ||||| |||||||| ||||| || ||||||||||||||| |  ||  ||   |   |  | |  | ||| ||  ||||   |     |   | |||  | |||  |  || || ||     || |               
ATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAGGAAGAACAGGGTCCATTACCCAAATTCCTATTCTGACAATGCCTAATGATGgtaagtaaccatggcttttttatctttgttattat--ataac-tatatgaagggcagacctagtgtagtggttagagctgtctcactgagtcaccaggccatg

upper sequence: GLYMA09G38110.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G094497_T03 (Zea mays), 5'ss of exon 1
ATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGgtgatgaaatat-----tattgaatcttat----cagctatcatgcataat-gcact-----ctcaattctgactgattgtttttcttgaacttctgtacag
|||||||| ||| | ||||||||||| || ||||||||  | ||||| ||  ||| |||||| ||||| || ||||| |||||||| |||||||| |||||| |  ||  ||     | || |   ||||     |  |||  |  |||||   |||     |   ||| | | || || | |    | | |||||| ||  
ATGTATACTGATTTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAGGAAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaaccatgtcttttttaatctttatattataattatactttataattatactatgtgccgtattgttattggttttgtacacttatcttctgaac--

upper sequence: GLYMA09G38110.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 10
ATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGgtgatg--aaatattattgaatcttatcagctatcatgcataatgcactctcaattctgactgattgtttttcttgaacttctgtacag
|||||||| ||||| || || || || |||||||||||| | ||||| || || || || || ||||||||||| |||||| |||| ||||| ||||||||| |||  ||  || ||  |   | |||   |     | ||    || | |     |       |   |   | |||  |||   ||||
ATGTATACTGATCTGGCGACGATTTATGAACGTGCTGGACGTATTGAAGGACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaagcatcatccatattgatctagtggtgagaatttctcattatagtggcactacactcactgaacctgattttc---acag

upper sequence: GLYMA09G38110.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 5'ss of exon 9
ATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGgtga--tgaaa--------tattattgaatcttatcagctatcatgcat--aatgcactctcaattctgactgattgtttttcttgaacttctgtacag--------------------------------------------------------------------
|||||||| ||||| || || || || |||||||||||| |||| || || || ||||| |||||||| || ||||| |||||||| ||||| ||||||||| |  || |         | | ||  | | | |  |  |    |   |  ||||  |  |  | | ||    ||| |||||  |    ||||  || |                                                                    
ATGTATACTGATCTGGCCACCATTTATGAACGTGCTGGACGAATCGAAGGCCGTAAAGGATCTATTACTCAGATTCCTATTCTAACTATGCCGAATGATGgtcagttgcatccttcctttgtcatcaagtttcagtatttgctttctttgaaatgggcattttactttgttatattatttttgct--ctttcttgactgcgtgcagtcttcgactgtggacttctccttgtctgtactaagcttcacctttgtggcatttcgtgcag

upper sequence: GLYMA09G38110.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S85_75V6.1 (Physcomitrella patens), 5'ss of exon 9
ATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGgtgatgaaatattattgaatcttatcagctatcatgcataat-gcactctcaattctgactgattgttttt-cttga-acttctgtacag--------------------------------------------------------------------------------------------------
||||| || |||||||| || || ||||||||||||||  |||||||||| || ||||| ||||| || || ||||| |||||||| |||||||| |||||| | |    ||  |  |   ||||||   ||     ||| | |    || | |  ||    | |    ||  |||| ||||   | | |                                                                                                  
ATGTACACGGATCTTGCCACTATTTACGAACGTGCTGGGCGAATTGAGGGCCGCAAAGGGTCTATCACTCAGATTCCCATTCTAACTATGCCTAACGATGgtta-gttgcatcctcca--tttatcactaatttcttatattagtggacttagtgatggagaactacccttatttgatactttgtttctgtccttacttgaccttctacaggccttaatttatttctttgaattgtgatttttttttctttaggttactgagtttcgtgtatgtcgtactttttgcag

upper sequence: GLYMA09G38110.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 5'ss of exon 10
ATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGgtgatgaaatattattgaatcttatcagctatcatgcataat--gcactctcaatt---ctgactgattgtttttcttgaacttctgtacag-------------------------------------------------------------------------------------------------
||||| || |||||||| || || || |||||||||||| | |||||||| || ||||| |||||||| || || |||||| |||| ||||| || || ||| ||    ||   |  ||   |  | |   |  || |  ||  || ||  | |||    |  |   | ||| || |||| |   |  |                                                                                                    
ATGTACACCGATCTTGCCACCATTTATGAACGTGCTGGACGTATTGAGGGCCGTAAAGGATCTATTACTCAGATCCCAATTTTAACTATGCCCAACGACGgtaattt--tagcctcaaactcttgctgaatttttgtaagattagcgctgccgattagcttttcctttagttctttttgaccgcttacaagtgccagtcgccctactattttctttctgcatgaatgcctttcttttgagcctctaatcttcttctttttaatctcttttgtccctacgttctccgcag

upper sequence: GLYMA09G38110.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ13375 (Selaginella moellendorffii), 5'ss of exon 9
ATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGgtgatgaaatattattgaatcttatcagctatcatgca-taatgcactctcaattctgactgattgtttttcttgaacttctgtacag
|||||||||||| | |||||||| ||||| ||||||||| ||||||| || ||||  || || || || |||||||| ||||| |  ||||| || |||||| | || || |   |||   | |||    |||||  | | |   |||| ||                                    
ATGTATACAGATTTGGCAACAATTTACGAGCGTGCTGGACGAATTGAAGGACGAATGGGATCAATCACTCAAATTCCCATTCTCAGTATGCCAAACGATGgt-acgagatgtc--tga---tcatcgag-atcatctactgacttactcgcag-----------------------------------

upper sequence: GLYMA09G38110.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ11911 (Selaginella moellendorffii), 5'ss of exon 9
ATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGgtgatgaaatattattgaatcttatcagctatcatgca-taatgcactctcaattctgactgattgtttttcttgaacttctgtacag
|||||||||||| | |||||||| ||||| ||||||||| ||||||| |||||||  || || || || |||||||| ||||| |  ||||| || |||||| | || || |   |||   | |||    |||||  | | |   |||| ||                                    
ATGTATACAGATTTGGCAACAATTTACGAGCGTGCTGGACGAATTGAAGGGCGAATGGGATCAATCACTCAAATTCCCATTCTCAGTATGCCAAACGATGgt-acgagatgtc--tga---tcatcgag-atcatctactgacttactcgcag-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426282|gb|CA937802.1|CA937802
EST:     GCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATG                         ATATTACGCATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGA
genomic: GCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGgtgatgaaat ... ttctgtacagATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGA
EST: gi|27426098|gb|CA937618.1|CA937618
EST:     GCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGA
genomic: GCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGgtgatgaaat ... ttctgtacagATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGA
EST: gi|16279376|gb|BI943404.1|BI943404
EST:     GCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGA
genomic: GCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGgtgatgaaat ... ttctgtacagATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGA
EST: gi|16277795|gb|BI942566.1|BI942566
EST:     GCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATG                         ATATTACGCATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGA
genomic: GCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGgtgatgaaat ... ttctgtacagATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGA
EST: gi|16283538|gb|BI945603.1|BI945603
EST:     GCGAACAGGCTCTATTACACAAATTCCAATTCTGACCATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGA
genomic: GCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGgtgatgaaat ... ttctgtacagATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGA
EST: gi|16277730|gb|BI942533.1|BI942533
EST:     GCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGA
genomic: GCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGgtgatgaaat ... ttctgtacagATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGA
EST: gi|16284553|gb|BI946150.1|BI946150
EST:     GCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGA
genomic: GCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGgtgatgaaat ... ttctgtacagATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGA