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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAGgtgtgtttagtattgtttattcccatatttgtttgatattaactgcactttgaactgtatatttcatgtgacactattttagcctgcaatgttttaaaaa...

Basic information

species Glycine max
transcript GLYMA09G38010.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326691|gb|FK018878.1|FK018878
EST:     GTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAG                         TTGGATGGAGGAGGCGTGGCAAGTGGAGGTCTTCGAGAACTGATACCTTGC
genomic: GTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAGgtgtgtttag ... ttgtgtatagTTGGATGGAGGAGGTGTGGCAAGTGGAGGTCTTCGAGAACTGATACCTTGC
EST: gi|208275338|gb|GE079372.1|GE079372
EST:     GTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAG                         TTGGATGGAGGAGG
genomic: GTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAGgtgtgtttag ... ttgtgtatagTTGGATGGAGGAGG
EST: gi|23063937|gb|BU578710.1|BU578710
EST:     GTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAG                         TTGGATGGAGGAGGTGTGGCAAGTGGAGGTCTTCGAGAACTGATACCTTGC
genomic: GTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAGgtgtgtttag ... ttgtgtatagTTGGATGGAGGAGGTGTGGCAAGTGGAGGTCTTCGAGAACTGATACCTTGC
EST: gi|58017972|gb|CX704714.1|CX704714
EST:     GTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAG                         TTGGATGGAGGAGGTGTGGCAAGTGGAGGTCTTCGAGAACTGATACCTTGC
genomic: GTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAGgtgtgtttag ... ttgtgtatagTTGGATGGAGGAGGTGTGGCAAGTGGAGGTCTTCGAGAACTGATACCTTGC
EST: gi|208262320|gb|GE059681.1|GE059681
EST:     GTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAG                         TTGGATGGAGGAGGTGTGGCAAGTGGAGGTCTTCGAGAACTGATACCTTGC
genomic: GTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAGgtgtgtttag ... ttgtgtatagTTGGATGGAGGAGGTGTGGCAAGTGGAGGTCTTCGAGAACTGATACCTTGC
EST: gi|58021325|gb|CX708066.1|CX708066
EST:     GTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAG                         TTGGATGGAGGAGGTGTGGCAAGTGGAGGTCTTCGAGAACTGATACCTTGC
genomic: GTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAGgtgtgtttag ... ttgtgtatagTTGGATGGAGGAGGTGTGGCAAGTGGAGGTCTTCGAGAACTGATACCTTGC
EST: gi|57575913|gb|CX548884.1|CX548884
EST:     GTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAG                         TTGGATGGAGGAGGTGTGGCAAGTGGAGGTCTTCGAGAACTGATACCTTGC
genomic: GTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAGgtgtgtttag ... ttgtgtatagTTGGATGGAGGAGGTGTGGCAAGTGGAGGTCTTCGAGAACTGATACCTTGC
EST: gi|151406834|gb|EV276649.1|EV276649
EST:     GTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAG                         TTGGATGGAGGAGGTGTGGCAAGTGGAGGTCTTCGAGAACTGATACCTTGC
genomic: GTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAGgtgtgtttag ... ttgtgtatagTTGGATGGAGGAGGTGTGGCAAGTGGAGGTCTTCGAGAACTGATACCTTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGAAGgtgtgtttagtattgtttattcccatatttgtttgatattaactgcactttgaactgtatatttcatgtgacactattttagcctgcaatgttttaaaaa

- AGCTGA
-  GCTGAT
- - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - -  AAGAAG