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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGTGGAGTATCTGCACTTGTTGATCTCTGTTCTTCATCAGTATCAAAAATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAGgtaattaatttgattaaaacctgctgtgtgcatatcaccctttttgttggtttcttagaatgcttattttcttatttaattaatgtcctttattgaagct...

Basic information

species Glycine max
transcript GLYMA09G37720.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G37720.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G60350.1 (Arabidopsis thaliana), 5'ss of exon 8
AAGGTGGAGTATCTGCACTTGTTGATCTCTGTTCTTCATCAGTATCAAAAATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAGgtaattaatttgattaaaacctgctgtgtgcatatcaccctttttgttggtttcttagaatgcttattttcttatttaattaatgtcctttattgaagct
|||| |||||    ||||||||| | |||||||| || || || || |||||||| || || ||| |||| || |||||||||||||||||||| || |||||  |||    | | ||   | ||||   ||||||  | |||  | |  |||       ||  | |  |||||| ||  || | |              
AAGGGGGAGTTGTAGCACTTGTTCAGCTCTGTTCGTCTTCTGTTTCCAAAATGGCTCGTTTTATGGCTGCATTAGCATTGGCATACATGTTTGATGGAAGgtacgtaa---aacttaa--ttactgtaatcatatccacatttaaggtaatttgcagatctgactttgatcttatctatctattataacag---------

upper sequence: GLYMA09G37720.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G44900.1 (Arabidopsis thaliana), 5'ss of exon 9
AAGGTGGAGTATCTGCACTTGTTGATCTCTGTTCTTCATCAGTATCAAAAATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAGgta-attaatttgattaaaacctgctgtgtgcatatcaccctttttgttggtttcttagaatgcttattttcttatttaattaatgtcctttattgaagct
|||| |||||  | || |||||| |  | ||||| || || || ||||||||||| ||||||||| |||| ||||| ||||||||||||||||| || ||||| |||||| |    | ||| |  |   |  | ||| |   ||   |  |  ||| |   |      ||||    | |||||  |  ||  |        
AAGGAGGAGTTCCAGCTCTTGTTCACTTGTGTTCGTCTTCTGTCTCAAAAATGGCTCGATTCATGGCTGCATTGGCTTTGGCATACATGTTTGATGGAAGgtatattaatat----ataacttagttaataaacatcccaaattcaatccgactctcacggt------tttcgatctgaattatcgatctgcaacag----

upper sequence: GLYMA09G37720.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv15s0021g01810.t01 (Vitis vinifera), 5'ss of exon 10
AAGGTGGAGTATCTGCACTTGTTGATCTCTGTTCTTCATCAGTATCAAAAATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAGgtaatta-----------atttgattaaaacc--tgctgtgtgcatatcaccctttttgttggtttcttagaatgcttattttcttatttaattaatgtcctttattgaagct
|||| |||||  | || |||||  |||| ||| |||| |||||||||||||||||||| |||||| |||| |||||| | |||||||||||||| || ||||| |||           || |  ||| | ||  |  ||||  ||  |||| || ||||     ||| |   |     |    |  |      |    ||||||         
AAGGGGGAGTGCCAGCCCTTGTCCATCTTTGTGCTTCCTCAGTATCAAAAATGGCACGCTTCATGGCTGCATTGGCACTTGCATACATGTTTGATGGAAGgtatttactcccaattctatgtagttagacccaatattgtgctcaagtcactctctttgccaaattcctttgaaaagcacccccccacccccct----tccttt---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588079|gb|AW703882.1|AW703882
EST:     ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAG                         AATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG
genomic: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAGgtaattaatt ... tgttttgcagAATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG
EST: gi|26058330|gb|CA801244.1|CA801244
EST:     ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAG                         AATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG
genomic: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAGgtaattaatt ... tgttttgcagAATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG
EST: gi|26058746|gb|CA801660.1|CA801660
EST:     ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAG                         AATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG
genomic: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAGgtaattaatt ... tgttttgcagAATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG
EST: gi|7685215|gb|AW755863.1|AW755863
EST:     ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAG                         AATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG
genomic: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAGgtaattaatt ... tgttttgcagAATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG
EST: gi|18040948|gb|BM309242.1|BM309242
EST:     ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAG                         AATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG
genomic: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAGgtaattaatt ... tgttttgcagAATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG
EST: gi|6719933|gb|AW307580.1|AW307580
EST:     ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAG                         AATGGATGAATATGCTNTAGTAGTCACTTCATCTGANAGTATTTCTAAGAG
genomic: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAGgtaattaatt ... tgttttgcagAATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG
EST: gi|208117756|gb|GD914638.1|GD914638
EST:     ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAG                         AATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG
genomic: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAGgtaattaatt ... tgttttgcagAATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG