1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGCTAAACAATTGTGATGATGTGCTTCCTATATATATTGGAGATGATCGGACAGACGAAGATGCATTTAAGgtaatatttagcttccagtgatgcactgttgcacctattccctttatttttcactttgctctgttgatttctttaacactgatatggtatggaacaatctgtttcag
species | Glycine max |
transcript | GLYMA09G36570.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TTCCTTATATATATTGGAGATGATCGGACAGACGAAGATGCATTTAAG GTTTTTGAGAGAGGGAAATAAAGGTTATGGGATCTTGGTGTCTTCAGCACCEST: gi|58024090|gb|CX710831.1|CX710831
genomic: TTCC-TATATATATTGGAGATGATCGGACAGACGAAGATGCATTTAAGgtaatattta ... tctgtttcagG-TTTTGAGAGAGGGAAATAAAGGTTATGGGATCTTGGTGTCTTCAGCACC
EST: TGCTTCCTATATATATTGGAGATGATCGGACAGACGAAGATGCATTTAAG GTTTTGAGAGAGGGAAATAAAGGTTATGGGATCTTGGTGTCTTCAGCACCAEST: gi|6566157|gb|AW233794.1|AW233794
genomic: TGCTTCCTATATATATTGGAGATGATCGGACAGACGAAGATGCATTTAAGgtaatattta ... tctgtttcagGTTTTGAGAGAGGGAAATAAAGGTTATGGGATCTTGGTGTCTTCAGCACCA
EST: TGCTTCCTATATATATTGGAGATGATCGGACAGACGAAGATGCATTTAAG GTTTTGAGAGAGGGATATAAAAGTTATGGGATCCTGGTGTCTTCAGCACCA
genomic: TGCTTCCTATATATATTGGAGATGATCGGACAGACGAAGATGCATTTAAGgtaatattta ... tctgtttcagGTTTTGAGAGAGGGAAATAAAGGTTATGGGATCTTGGTGTCTTCAGCACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTAAACAATTGTGATGATGTGCTTCCTATATATATTGGAGATGATCGGACAGACGAAGATGCATTTAAGgtaatatttagcttccagtgatgcactgttgcacctattccctttatttttcactttgctctgttgatttctttaacactgatatggtatggaacaatctgtttcag
- - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG