1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGGTTGGAAGGTTGTATCAATACACGGGGACAAAGCCCAACATGATCGCACAAAAGCACTCTCATTGTTCAAGAATGGAAGCTGTCCTTTGATGgtaacctattttacattatgattattaattattaattatggcagtttgttggctcaaaagttagaacaaatttgtgaattggtatctatgtttggctgtt...
species | Glycine max |
transcript | GLYMA09G34390.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATCGCACAAAAGCACTCTCATTGTTCAAGAATGGAAGCTGTCCTTTGATG ATTGCTACTGATGTGGCCGCACGAGGATTGGATATTCCAGATGTTGAAGTAEST: gi|209710487|gb|BW662023.1|BW662023
genomic: ATCGCACAAAAGCACTCTCATTGTTCAAGAATGGAAGCTGTCCTTTGATGgtaacctatt ... caatgagcagATTGCTACTGATGTGGCCGCACGAGGATTGGATATTCCAGATGTTGAAGTA
EST: CTGTCCTTTGATG ATTGCTACTGATGTGGCCGCACGAGGATTGGATATTCCAGATGTTGAAGTAEST: gi|209706566|gb|BW676114.1|BW676114
genomic: CTGTCCTTTGATGgtaacctatt ... caatgagcagATTGCTACTGATGTGGCCGCACGAGGATTGGATATTCCAGATGTTGAAGTA
EST: GGAAGCTGTCCTTTGATG ATTGCTACTGATGTGNCCGCACGAGGATTGGATATTCCAGATGTTGAAGTAEST: gi|31307413|gb|CD392616.1|CD392616
genomic: GGAAGCTGTCCTTTGATGgtaacctatt ... caatgagcagATTGCTACTGATGTGGCCGCACGAGGATTGGATATTCCAGATGTTGAAGTA
EST: CTGTCCTTTGATG ATTGCTACTGATGTGGCCGCACGAGGATTGGATATTCCAGATGTTGAAGTA
genomic: CTGTCCTTTGATGgtaacctatt ... caatgagcagATTGCTACTGATGTGGCCGCACGAGGATTGGATATTCCAGATGTTGAAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTTGGAAGGTTGTATCAATACACGGGGACAAAGCCCAACATGATCGCACAAAAGCACTCTCATTGTTCAAGAATGGAAGCTGTCCTTTGATGgtaacctattttacattatgattattaattattaattatggcagtttgttggctcaaaagttagaacaaatttgtgaattggtatctatgtttggctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG