Sequence
atgc intronic sequence ATGC exonic sequenceGCTTGGGGTGCTATGTCTCTGCAGCTACATCACCCTTCCATTATATGCTCTTGTTACTCAGgtagcacatactttttttttccttctgattttgttctatttgatcagagccattctaatgctttgattgatgttttttcagtgagcatgaactaaacagc...
Basic information
species | Glycine max |
transcript | GLYMA09G32920.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G32920.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G65970.1 (Arabidopsis thaliana), 5'ss of exon 14
GCTTGGGGTGCTATGTCTCTGCAGCTACATCACCCTTCCATTATATGCTCTTGTTACTCAGgtagcacatactttttttttc-cttctgattttgttctatttg-atcagagccattctaatgctttgattga-tgttttttcagtgagcatgaactaaacagc
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CGTTGGAGCTTTGATTTTGTGCAGCTACATCACACTTCCTTTGTATGCACTAGTTACTCAGgta-catttatcctaatttcagcctttactctccagatatttgtgtctacgaagctatatagtagtaactaagcaacaaacttatgttgttgttgtgggcag-
upper sequence: GLYMA09G32920.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 14
GCTTGGGGTGCTATGTCTCTGCAGCTACATCACCCTTCCATTATATGCTCTTGTTACTCAGgtagcacatactttttttttccttctgattttgttctatttgat-cagagccattctaatgct-ttgattgatgttttttcagtgagcatgaactaaacagc-
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GGTTGGGGTGCTATTTCTTTGCAGCTACATTACACTTCCACTGTATGCCCTTATAACTCAGgtatcgt-cattctgctaagtgttttgtttatgtacactggcattcttagtggattaaatacaactcattgacaattaat--gtgttttttggcaacacaactMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21677541|gb|BQ629892.1|BQ629892EST: TATGTCTCTGCAGCTACATCACCCTTCCATTATATGCTCTTGTTACTCAG ATGGTCTCAAGAATGAAAAAATCAATATTTGACGAACAAACATCGAAGGCG
genomic: TATGTCTCTGCAGCTACATCACCCTTCCATTATATGCTCTTGTTACTCAGgtagcacata ... acacctgcagATGGGCTCAAGAATGAAAAAATCAATATTTGACGAACAAACATCGAAGGCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTTGGGGTGCTATGTCTCTGCAGCTACATCACCCTTCCATTATATGCTCTTGTTACTCAGgtagcacatactttttttttccttctgattttgttctatttgatcagagccattctaatgctttgattgatgttttttcagtgagcatgaactaaacagc
- - - - - - - - - CTGCAG
- - - - - - - - - - GCAGCT