Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGATGGCTTGTCCTCATGTAACAGGAATTGCAACCTTGGTCAAAGCTGTCCATCCTTCATGGTCTCCATCTGCTATCAAATCTGCCATCATGACCACTGgtaatacatactgatcttaatatcattttccagaggcctatatatataaactaaactatgttagagactcttcttaatcagacaaattggaacagaaccc...

Basic information

species Glycine max
transcript GLYMA09G32760.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G32760.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv04s0044g01970.t01 (Vitis vinifera), 5'ss of exon 10
TCGATGGCTTGTCCTCATGTAACAGGAATTGCAACCTTGGTCAAAGCTGTCCATCCTTCATGGTCTCCATCTGCTATCAAATCTGCCATCATGACCACTGgtaatacatactgatcttaata-tcattttccagaggcctata-tatataaactaaa-ctatgttagagactcttcttaatcagacaaattggaacagaaccc-----
|| ||||||||||| ||||||||||||||||   |||||||||||||||| ||||| ||||||||||||||||| || |||||||| |||||||| || ||||| |  | |   |   || | |||  ||   |     |||| | | | ||| |||  ||||      ||       ||  |   | |||  || || |        
TCTATGGCTTGTCCGCATGTAACAGGAATTGTGGCCTTGGTCAAAGCTGTGCATCCATCATGGTCTCCATCTGCAATTAAATCTGCGATCATGACAACGGgtaaaatttccaagttccaaaactcacgtt---gttctttatagtttttgaacaaaaattatgaccccaacctcagaaaaaaactgacattacaaaaggaaaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296627|gb|FG991195.1|FG991195
EST:     CCATCCTTCATGGTCTCCATCTGCTATCAAATCTGCCATCATGACCACTG                         CTACAGTTCTGGATAAGCACCACAGACCCATCACTGCAGATCCAGAACAAA
genomic: CCATCCTTCATGGTCTCCATCTGCTATCAAATCTGCCATCATGACCACTGgtaatacata ... tattatgcagCTACAGTTCTGGATAAGCACCACAGACCCATCACTGCAGATCCAGAACAAA
EST: gi|19346777|gb|BM891657.1|BM891657
EST:     CCATCCTTCATGGTCTCCATCTGCTATCAAATCTGCCATCATGACCACTG                         CTACAGTTCTGGATAAGCACCACAGACCCATCACTGCAGATCCAGAACAAA
genomic: CCATCCTTCATGGTCTCCATCTGCTATCAAATCTGCCATCATGACCACTGgtaatacata ... tattatgcagCTACAGTTCTGGATAAGCACCACAGACCCATCACTGCAGATCCAGAACAAA