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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGTCTTCACCTGTCTCTACCGAATGTCTGCTCTCAGTTATCTTAGgtaaaatatctgacgactaatttcactgttataactactgtacatggatttcagccactctttacccttctctttcctgcag

Basic information

species Glycine max
transcript GLYMA09G31920.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G31920.2 (Glycine max), 5'ss of exon 10
lower sequence: AT3G18480.1 (Arabidopsis thaliana), 5'ss of exon 18
GTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGTCTTCACCTGTCTCTACCGAATGTCTGCTCTCAGTTATCTTAGgtaaaata--tctgacgactaatttcactgttataactactgtacatg---gatttcagccactctttacccttctctttcctgcag--
 || ||  | || || || ||||| || || || ||||||||  || | |||||||| ||||||||||| |||||||||  ||||||||| |||||||| |   |   | | |  | |   ||||| || | |  ||  ||   ||||| |   | | | | |   | | |||   |     
ATACGCAAGGACATTTGCTTTCTTCTACACAATAGGATTGCACGTCCTTGTCTTCACTTGTCTCTACCGTATGTCTGCTTACAGTTATCTCAGgtaaaacaaacccaccaatttttgtttttgttacaagtccattatgtgattgattttatttaatttcttcttctttatttatggtttag

upper sequence: GLYMA09G31920.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv17s0000g03970.t01 (Vitis vinifera), 5'ss of exon 18
GTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGTCTTCACCTGTCTCTACCGAATGTCTGCTCTCAGTTATCTTAGgtaaa-atatctga---cgactaatttcactgtta-------taactactgtaca-tggatttcagccactctttacccttctct---ttcctgcag
 |||||||| || ||||| ||||| ||||||||||| || ||| || |||| |||||||| || ||| ||||||| ||||| ||  |||||||||||  || ||| |    | ||| ||    ||||        ||| |   ||| | | | |||     |  | | ||   | | |   ||   ||||
ATATGCCCGGACATTCGCTTTCTTCTATACCATTGGGTTACATGTCCTGGTGTTCACCTGCCTATACAGAATGTCAGCTCTGAGCCATCTTAGgtaagcatctctcaatttgcctatttcttttgtttctttttctaaatgtagtagaattggttttcattaaccataacatgtatttgggttttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120496573|gb|EH224740.1|EH224740
EST:     ATCTTGGTCTTCACCTGTCTCTACCGAATGTCTGCTCTCAGTTATCTTAG                         CAATGGCCCAGAGGAATTCCTTGTCGGAGAGAAAAACGTTGATCTTCCGCG
genomic: ATCTTGGTCTTCACCTGTCTCTACCGAATGTCTGCTCTCAGTTATCTTAGgtaaaatatc ... tttcctgcagCAATGGCCCAGAGGAATTCCTTGTCGGAGAGAAAAACGTTGATCTTCCGCG
EST: gi|120494352|gb|EH222519.1|EH222519
EST:     ATCTTGGTCTTCACCTGTCTCTACCGAATGTCTGCTCTCAGTTATCTTAG                         CAATGGCCCAGAGGAATTCCTTGTCGGAGAGAAAAACGTTGATCTTCCGCG
genomic: ATCTTGGTCTTCACCTGTCTCTACCGAATGTCTGCTCTCAGTTATCTTAGgtaaaatatc ... tttcctgcagCAATGGCCCAGAGGAATTCCTTGTCGGAGAGAAAAACGTTGATCTTCCGCG
EST: gi|9203341|gb|BE329627.1|BE329627
EST:     ATCTTGGTCTTCACCTGTCTCTACCGAATGTCTGCTCTCAGTTATCTTAG                         CAATGGCCCAGAGGAATTCCTTGTCGGAGAGAAAAACGTTGATCTTCCGCG
genomic: ATCTTGGTCTTCACCTGTCTCTACCGAATGTCTGCTCTCAGTTATCTTAGgtaaaatatc ... tttcctgcagCAATGGCCCAGAGGAATTCCTTGTCGGAGAGAAAAACGTTGATCTTCCGCG
EST: gi|51338349|gb|CO982215.1|CO982215
EST:     ATCTTGGTCTTCACCTGTCTCTACCGAATGTCTGCTCTCAGTTATCTTAG                         CAATGGCCCAGAGGAATTCCTTGTCGGAGAGAAAAACGTTGATCTTCCGCG
genomic: ATCTTGGTCTTCACCTGTCTCTACCGAATGTCTGCTCTCAGTTATCTTAGgtaaaatatc ... tttcctgcagCAATGGCCCAGAGGAATTCCTTGTCGGAGAGAAAAACGTTGATCTTCCGCG