1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTTTGCATATATTGTTGATTGCAAAGAACCCAAGGCTTGTACTGTTCTACTAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatcgacatgttctaaaaatttagttttgaccatactgctttctgaaacttgttttcttgacag
species | Glycine max |
transcript | GLYMA09G28650.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAG GATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTEST: gi|208278764|gb|GE077983.1|GE077983
genomic: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatc ... ttcttgacagGATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCT
EST: TAAGGGGTGCTAGTAAGGATCTATCAAATGAAGTTGAAAGAAACCTACAG GATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCTEST: gi|193547528|gb|FK501465.1|FK501465
genomic: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatc ... ttcttgacagGATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCT
EST: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAG GATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCTEST: gi|58017480|gb|CX704222.1|CX704222
genomic: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatc ... ttcttgacagGATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCT
EST: ATTAAATGAAGTTGAAAGAAACCTACAG GATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCTEST: gi|209714673|gb|BW674236.1|BW674236
genomic: ATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatc ... ttcttgacagGATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCT
EST: GAAACCTACAG GATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCTEST: gi|10842929|gb|BF066288.1|BF066288
genomic: GAAACCTACAGgtaagctatc ... ttcttgacagGATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCT
EST: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAG GATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCAAAACTTGTTCCTEST: gi|26058880|gb|CA801794.1|CA801794
genomic: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatc ... ttcttgacagGATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCT
EST: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAG GATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCAAAACTTGTEST: gi|192309232|gb|FG999123.1|FG999123
genomic: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatc ... ttcttgacagGATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGT
EST: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAG GATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCTEST: gi|26048688|gb|CA785141.1|CA785141
genomic: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatc ... ttcttgacagGATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCT
EST: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAG GATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCTEST: gi|193493510|gb|FK460092.1|FK460092
genomic: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatc ... ttcttgacagGATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCT
EST: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAG GATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTEST: gi|7590571|gb|AW706320.1|AW706320
genomic: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatc ... ttcttgacagGATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTT
EST: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAG GATGCCATGTCTGTTGEST: gi|208059831|gb|GD857833.1|GD857833
genomic: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatc ... ttcttgacagGATGCCATGTCTGTTG
EST: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAG GATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCTEST: gi|208336139|gb|GE139138.1|GE139138
genomic: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatc ... ttcttgacagGATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCT
EST: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAG GATGCCATGTCTGTTGCAAGGAACATTATAAAAAEST: gi|207803832|gb|GD772791.1|GD772791
genomic: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatc ... ttcttgacagGATGCCATGTCTGTTGCAAGGAACATTATAAAAA
EST: TAAGGGGTGCTAGTAAGGATCTATCAAATGAAGTTGAAAGAAACCTACAG GATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCTEST: gi|15199729|gb|BI423980.1|BI423980
genomic: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatc ... ttcttgacagGATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCT
EST: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAG GATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCTEST: gi|208270977|gb|GE067801.1|GE067801
genomic: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatc ... ttcttgacagGATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCT
EST: TAAGGGGTGCTAGTAAGGATCTATCAAATGAAGTTGAAAGAAACCTACAG GATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCT
genomic: TAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatc ... ttcttgacagGATGCCATGTCTGTTGCAAGGAACATTATAAAAAATCCTAAACTTGTTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGCATATATTGTTGATTGCAAAGAACCCAAGGCTTGTACTGTTCTACTAAGGGGTGCTAGTAAGGATCTATTAAATGAAGTTGAAAGAAACCTACAGgtaagctatcgacatgttctaaaaatttagttttgaccatactgctttctgaaacttgttttcttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA