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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCAGCATAAAAGGAGACTGGATGGTGGAACGAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgtgagcatggtgttatatcattttgataaacataatatctgtatcttgttcacaattttatgaagagatatgacttgtggtttcag

Basic information

species Glycine max
transcript GLYMA09G15980.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G15980.2 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G043509_T01 (Zea mays), 5'ss of exon 10
GAGCAGCATAAAAGGAGACTGGATGGTGGAACGAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgt--gagcatggtgttatatc----attttgataaacataatatctgtatcttgttcacaattttatgaagagatatgac----ttgtggtttcag-------
||||| ||    || ||    ||   || ||| ||||||||  | |||||||||  ||| |||||||||| ||| ||| | |||||||||||||||||||||  | |||||| |    |         |   |   || ||| | | |        ||   || ||  |    |||   |    ||||  |  ||        
GAGCATCAGCGGAGAAGGACAGACCCTGCAACAAATGAACCACTCTTCACAAATTGCACAAGAGATTTTACTGGAACTGTTGATTACATATTTTACACAGgttggtgcatggagcctcactgcgggcctgtttggccacaatgtttat---caaaccatggttatacaatactatacttcacaattgtcatgacaataccata

upper sequence: GLYMA09G15980.2 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G118467_T01 (Zea mays), 5'ss of exon 10
GAGCAGCATAAAAGGAGACTGGATGGTGGAACGAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgt--gagcatggtgttatatcattt----tgataaacataatatctgtatct------------tgttcacaattttatgaagagatatgacttgtggtttcag--------------------------
  | ||||| |  ||||    ||   || ||| ||||||||  | |||||||||  ||| |||||||||| ||| ||| | |||||||||||||||||||||  | |||||| |    | |           || || | |  ||| | | |            | ||||   |  | | |  ||||    ||| |  |||                             
TTGGAGCATCAGCGGAGGACAGACCCTGCAACAAATGAACCACTCTTCACAAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAGgttggtgcatggagactcacccacgcacacagtagactttaattctatgtttgcagcttctgtatattcattttcctctaataagattgtgcttattcttttgatgatggcgatgtttgttctctttcag

upper sequence: GLYMA09G15980.2 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G124051_T01 (Zea mays), 5'ss of exon 11
GAGCAGCATAAAAGGAGACTGGATGGTGGAACGAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgtgagca-tggtgttatatcattttgataaacataatatctgtatcttgttcacaattttatgaagagatatgacttgtggtttcag--------------------------------------------------------------------------------------------
|| || ||   ||||||  ||||   ||| || ||||| || || |||||||||  ||| || |||||||  || || |||||||||||||||||||||||| ||   |    || |   | |     || |      ||| | ||||      | |||  |  |      || |   | |    |                                                                                             
GATCACCAGCGAAGGAGGATGGACCCTGGGACAAATGAGCCATTGTTCACAAATTGCACAAGGGATTTTACCGGTACCCTAGATTACATATTTTACACAGgttagtgcttaaattcttggactggttcaagcgcttgctctatctcttccctttactttggttcaagcgcttggccgcttgcgctatctcttttccttttagtttggctatctctgttgatctggaataagtagatattgtgttaacattgtcttttacaatgtgctcttctatttcag

upper sequence: GLYMA09G15980.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv08s0007g07020.t01 (Vitis vinifera), 5'ss of exon 10
GAGCAGCATAAAAGGAGACTGGATGGTGGAACGAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgtgagcatggtgttatatcattttgataaacataatatctgtatcttgttcaca-attttatgaagagatatgacttgtggtttcag------------------------------------------
||||| || |  || ||  ||||      ||| |||||||||||||| ||| ||  ||||||||||||||||||||| || |||||||||||||| |||||| | | |  |  || ||  |     |  |  |  |  || ||| || || ||| || |  |  | |  | |   |||||   | |                                           
GAGCAACAGAGGAGAAGGTTGGACCCCTCAACAAATGAACCTTTATTTACACATTGCACTAGAGATTTTATTGGCACCCTTGATTACATATTTTATACAGgtaatctttttcctacat-gtcggtttgcatctttttcctatattttatttacacatgtgcttcatacttgtagtttgtgccgttattgatgtttaggattctctaataaataagatttgtggttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16347875|gb|BI973470.1|BI973470
EST:     AAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAG                         CGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTT
genomic: AAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgtgagcatgg ... gtggtttcagCGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTT
EST: gi|58014993|gb|CX701735.1|CX701735
EST:     AAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAG                         CGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTT
genomic: AAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgtgagcatgg ... gtggtttcagCGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTT
EST: gi|57574329|gb|CX547304.1|CX547304
EST:     AAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAG                         CGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTT
genomic: AAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgtgagcatgg ... gtggtttcagCGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTT
EST: gi|254322136|gb|GR837550.1|GR837550
EST:     AAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAG                         CGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTT
genomic: AAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgtgagcatgg ... gtggtttcagCGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTT