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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGGGAACCCCTTGGAGAAGGGGACTCTAGTTGGGCCCTTGCATACTCGTACTTCAGTAGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgcatggttcattttactctttttctagttaagttaaatatttaggggatgtaaccttccatttcatgtctgtaattttgctcagtaggatatgcaagctttttctcatacatataccacggattggatgcttgtcttctgtgtagagataatttacttgatactctgattatcag

Basic information

species Glycine max
transcript GLYMA09G08150.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193671020|gb|FK608298.1|FK608298
EST:     GTGCTTCAGTAGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAAATCCTAACCGGTGGATCTGTATTAGAGTCGGGAGGAAATTTT
genomic: GTACTTCAGTAGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgcatggttca ... tgattatcagGGAGGGAAAATCCTAACCGGTGGATCTGTATTAGAGTCGGGAGGAAATTTT
EST: gi|58019812|gb|CX706554.1|CX706554
EST:     GTACTTCAGTAGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAAATCCTAACCGGTGGATCTGTATTAGAGTCGGGAGGAAATTTT
genomic: GTACTTCAGTAGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgcatggttca ... tgattatcagGGAGGGAAAATCCTAACCGGTGGATCTGTATTAGAGTCGGGAGGAAATTTT
EST: gi|57575444|gb|CX548419.1|CX548419
EST:     GTACTTCAGTAGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAAATCCTAACCGGTGGATCTGTATTAGAGTCGGGAGGAAATTTT
genomic: GTACTTCAGTAGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgcatggttca ... tgattatcagGGAGGGAAAATCCTAACCGGTGGATCTGTATTAGAGTCGGGAGGAAATTTT
EST: gi|193541518|gb|FK499200.1|FK499200
EST:     GTGCTTCAGTAGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAAATCCTAACCGGTGGATCTGTATTAGAGTCGGGAGGAAATTTT
genomic: GTACTTCAGTAGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgcatggttca ... tgattatcagGGAGGGAAAATCCTAACCGGTGGATCTGTATTAGAGTCGGGAGGAAATTTT
EST: gi|193630538|gb|FK580885.1|FK580885
EST:     GTACTTCAGTAGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAAATCCTAACCGGTGGATCTGTATTAGAGTCGGGAGGAAATTTT
genomic: GTACTTCAGTAGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgcatggttca ... tgattatcagGGAGGGAAAATCCTAACCGGTGGATCTGTATTAGAGTCGGGAGGAAATTTT
EST: gi|254336948|gb|GR843127.1|GR843127
EST:     ATTTCAGTCATAAAATCTCAG                         GGAGGGAAAATCCTAACCGGTGGATCTGTATTAGAGTCGGGAGGAAATTTT
genomic: ATTTCAGTCATAAAATCTCAGgcatggttca ... tgattatcagGGAGGGAAAATCCTAACCGGTGGATCTGTATTAGAGTCGGGAGGAAATTTT
EST: gi|254336949|gb|GR843128.1|GR843128
EST:     ATTTCAGTCATAAAATCTCAG                         GGAGGGAAAAT-CTAACCGGTGGATCTGTATTAGAGTCGGGAGGAAATTTT
genomic: ATTTCAGTCATAAAATCTCAGgcatggttca ... tgattatcagGGAGGGAAAATCCTAACCGGTGGATCTGTATTAGAGTCGGGAGGAAATTTT
EST: gi|19452651|gb|BM954061.1|BM954061
EST:     GTACTTCAGTAGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAAATCCTAACCGGTGGATCTGTATTAGAGTCGGGAGGAAATTTT
genomic: GTACTTCAGTAGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgcatggttca ... tgattatcagGGAGGGAAAATCCTAACCGGTGGATCTGTATTAGAGTCGGGAGGAAATTTT
EST: gi|58022682|gb|CX709423.1|CX709423
EST:     GTAGTTCAGTAGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG                         GGAGGGAAAATCCTAACCGGTGGATCTGTATTAGAGTCGGGAGGAAATTTT
genomic: GTACTTCAGTAGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgcatggttca ... tgattatcagGGAGGGAAAATCCTAACCGGTGGATCTGTATTAGAGTCGGGAGGAAATTTT