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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCTTCTCCACTTCCATACTTGACTGAGAAAGAACCCAAAATCTATGATATTTCCCTAGAGgtattttagagcacctttatatgcatgtacttagtattacttcctcttgtatctcagattaatggtatttcttgatggttcttctgtactactatatttg...

Basic information

species Glycine max
transcript GLYMA09G01270.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298195581|gb|HO043972.1|HO043972
EST:     TTCCATACTTGACTGAGAAAGAGCCCAAAATCTATGATATTTCCCTAGAG                         GCTCACATAAAACCTGCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACT
genomic: TTCCATACTTGACTGAGAAAGAACCCAAAATCTATGATATTTCCCTAGAGgtattttaga ... ttgctgcaagGCTCACATAAAACCTGCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACT
EST: gi|15202674|gb|BI425525.1|BI425525
EST:     TGATATTTCCCTAGAG                         GCTCACATAAAACCTGCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACT
genomic: TGATATTTCCCTAGAGgtattttaga ... ttgctgcaagGCTCACATAAAACCTGCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACT
EST: gi|193724130|gb|FK656410.1|FK656410
EST:     TTCCATACTTGACTGAGAAAGAACCCAAAATCTATGATATTTCCCTAGAG                         GCTCACATAAAACCTGCTGGGCA
genomic: TTCCATACTTGACTGAGAAAGAACCCAAAATCTATGATATTTCCCTAGAGgtattttaga ... ttgctgcaagGCTCACATAAAACCTGCTGGGCA
EST: gi|14011019|gb|BG725941.1|BG725941
EST:     TTCCATACTTGACTGAGAAAGAACCCAAAATCTATGATATTTCCCTAGAG                         GCTCACATAAAACCTGCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACT
genomic: TTCCATACTTGACTGAGAAAGAACCCAAAATCTATGATATTTCCCTAGAGgtattttaga ... ttgctgcaagGCTCACATAAAACCTGCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACT
EST: gi|7232656|gb|AW568010.1|AW568010
EST:     TTCCATACTTGACTGAGAAAGAACCCAAAATCTATGATATTTCCCTAGAG                         GCTCACATAAAACCTGCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACT
genomic: TTCCATACTTGACTGAGAAAGAACCCAAAATCTATGATATTTCCCTAGAGgtattttaga ... ttgctgcaagGCTCACATAAAACCTGCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACT
EST: gi|7232634|gb|AW567988.1|AW567988
EST:     TTCCATACTTGACTGAGAAAGAACCCAAAATCTATGATATTTCCCTAGAG                         GCTCACATAAAACCTGCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACT
genomic: TTCCATACTTGACTGAGAAAGAACCCAAAATCTATGATATTTCCCTAGAGgtattttaga ... ttgctgcaagGCTCACATAAAACCTGCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACT
EST: gi|298184616|gb|HO029829.1|HO029829
EST:     TTCCATACTTGACTGAGAAAGAACCCAAAATCTATGATATTTCCCTAGAG                         GCTCACATAAAACCTGCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACT
genomic: TTCCATACTTGACTGAGAAAGAACCCAAAATCTATGATATTTCCCTAGAGgtattttaga ... ttgctgcaagGCTCACATAAAACCTGCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACT
EST: gi|10847964|gb|BF071656.1|BF071656
EST:     TTCCATACTTGACTGAGAAAGAACCCAAAATCTATGATATTTCCCTAGAG                         GCTCACATAAAACCTGCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACT
genomic: TTCCATACTTGACTGAGAAAGAACCCAAAATCTATGATATTTCCCTAGAGgtattttaga ... ttgctgcaagGCTCACATAAAACCTGCTGGGCATGAAGATTCGGGTGTGGTGTCACGGACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATCCTTCTCCACTTCCATACTTGACTGAGAAAGAACCCAAAATCTATGATATTTCCCTAGAGgtattttagagcacctttatatgcatgtacttagtattacttcctcttgtatctcagattaatggtatttcttgatggttcttctgtactactatatttg

- - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - -  AAGAAC