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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCAGTGATGAGTTTAAACGTGTAATTGCATCTCTACATGGTAACGATGACAAGATACGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACTCAACAAgtaagagaatatcaacataggttacctggtttgtcatatttattatcttttttgctacttacatgcctaattgtgatattgtag

Basic information

species Glycine max
transcript GLYMA09G01160.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G01160.1 (Glycine max), 5'ss of exon 10
lower sequence: AT4G05520.1 (Arabidopsis thaliana), 5'ss of exon 12
CATCAGTGATGAGTTTAAACGTGTAATTGCATCTCTACATGGTAACGATGACAAGATACGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACTCAACAAgtaagagaatatcaacataggttacctggtttgtcatatttattatcttttttgctacttacatgcctaattgtgatattgtag-
|||||||||||| || |||||||| ||  ||||||||| |||||| || |||||||| || || || || ||||| || ||||||||||||||||||||||||||    | ||    | |      |  ||||| || || || | |||  ||  |||| |  ||   |   |   | |   |  
CATCAGTGATGAATTCAAACGTGTGATAACATCTCTACGTGGTAATGAAGACAAGATCCGTGTTGTCTTAAACAAAGCTGACCAAGTTGATACTCAACAAgtaag----tttcgttttcgtcccattcatttgttatgttcataagcttcatttttactcat-tgttgagccgctttttctaaag

upper sequence: GLYMA09G01160.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv00s0516g00020.t01 (Vitis vinifera), 5'ss of exon 13
CATCAGTGATGAGTTTAAACGTGTAATTGCATCTCTACATGGTAACGATGACAAGATACGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACTCAACAAgtaagag--------aatatcaacataggttacctggtttgtcatatttattatcttttttgctacttacatgcctaattgtgatattgtag------------------
 ||||||||||| ||||| ||||| ||||||||||||| |||||| |||||||||||||| || ||||||||||| || || ||||| ||||| ||||||||| ||           ||||  | ||  || | |   |  |||||||||   | | |      | ||      |   |  |||  |  | |                  
TATCAGTGATGAATTTAAGCGTGTGATTGCATCTCTACGTGGTAATGATGACAAGATACGTGTAGTTTTGAACAAAGCTGATCAAGTCGATACACAACAAgtaggatttacaactgttatcctcttatttttcattcctcttcatatttaccttttctcccagcaattgatcctcatttcttgacttgattgcatcttgttatactatag