1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAAGCAGGCCAAGACCTTGAAGGTTGCCTGCAATCTTAACAATGCTGCTTGCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAGgtattatagaagtctttcatcctttgagggtcactaaccttgtacataaaataatgacttttgatgtggattggtag
species | Glycine max |
transcript | GLYMA08G46090.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAG GTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCAAEST: gi|193331359|gb|FK296739.1|FK296739
genomic: GCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAGgtattataga ... ggattggtagGTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCAA
EST: GCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAG GTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCEST: gi|193386205|gb|FK351665.1|FK351665
genomic: GCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAGgtattataga ... ggattggtagGTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCC
EST: GCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAG GTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCAAEST: gi|193429516|gb|FK394464.1|FK394464
genomic: GCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAGgtattataga ... ggattggtagGTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCAA
EST: GCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAG GTGTTAGACCTCGAGAGTACAAATGTTAAAEST: gi|193566710|gb|FK526015.1|FK526015
genomic: GCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAGgtattataga ... ggattggtagGTGTTAGACCTCGAGAGTACAAATGTTAAA
EST: TTGAAGTTAAAAGACTACAAGGTAAGCAGAAAAATTGTGTACCAAG GTGTTAGACCTCGAGAGTAACAAATGTTAAAGCCCTCTATAGAAGGGCCCAEST: gi|58019857|gb|CX706599.1|CX706599
genomic: TTGAAGTTAAAAGACTACAAGG-AAGCAGAAAAATTGTGTACCAAGgtattataga ... ggattggtagGTGTTAGACCTCGAGAGT-ACAAATGTTAAAGCCCTCTATAGAAGGGCCCA
EST: AGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAG GTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCAAEST: gi|9259263|gb|BE347471.1|BE347471
genomic: AGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAGgtattataga ... ggattggtagGTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCAA
EST: GCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAG GTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCAA
genomic: GCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAGgtattataga ... ggattggtagGTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGCAGGCCAAGACCTTGAAGGTTGCCTGCAATCTTAACAATGCTGCTTGCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAGgtattatagaagtctttcatcctttgagggtcactaaccttgtacataaaataatgacttttgatgtggattggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA