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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGCTTGGCAAACAAAATCCTCATCTTATGCGATTGATTCAAGAGCATCAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGGgtaaggttaatctattctttgcattttcattttgttttgtttttctttttacctattaattgatgtccggtgacttaattttctgttatgttttag

Basic information

species Glycine max
transcript GLYMA08G32090.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193491837|gb|FK456473.1|FK456473
EST:     CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGG                         AAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCAC
genomic: CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGGgtaaggttaa ... tatgttttagAAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCAC
EST: gi|254335594|gb|GR847122.1|GR847122
EST:     CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGG                         AAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCAC
genomic: CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGGgtaaggttaa ... tatgttttagAAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCAC
EST: gi|120494681|gb|EH222848.1|EH222848
EST:     CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGG                         AAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCAC
genomic: CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGGgtaaggttaa ... tatgttttagAAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCAC
EST: gi|22929333|gb|BU546472.1|BU546472
EST:     CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGG                         AAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCAC
genomic: CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGGgtaaggttaa ... tatgttttagAAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCAC
EST: gi|192313582|gb|FK004164.1|FK004164
EST:     CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAAGGGGTGAGGG                         AAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCAC
genomic: CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGGgtaaggttaa ... tatgttttagAAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCAC
EST: gi|51336342|gb|CO980208.1|CO980208
EST:     CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGG                         AAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCAC
genomic: CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGGgtaaggttaa ... tatgttttagAAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCAC
EST: gi|254335595|gb|GR847123.1|GR847123
EST:     CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGG                         AAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCAC
genomic: CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGGgtaaggttaa ... tatgttttagAAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCAC
EST: gi|193456982|gb|FK422748.1|FK422748
EST:     CAAGTTGACTTCCTTCGCCTAATTAATGAACCCGTTGAAGGGGGTGAGGG                         AAATATACTGGGACA
genomic: CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGGgtaaggttaa ... tatgttttagAAATATACTGGGACA
EST: gi|7692091|gb|AW760206.1|AW760206
EST:     CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGG                         AAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCAC
genomic: CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGGgtaaggttaa ... tatgttttagAAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCAC
EST: gi|193539115|gb|FK496433.1|FK496433
EST:     CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGG                         AAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCGGTGACTGTCAC
genomic: CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGGgtaaggttaa ... tatgttttagAAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCAC
EST: gi|208171585|gb|GD971926.1|GD971926
EST:     CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGG                         AAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCA
genomic: CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGGgtaaggttaa ... tatgttttagAAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCA
EST: gi|120494767|gb|EH222934.1|EH222934
EST:     CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGG                         AAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCAC
genomic: CAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGGgtaaggttaa ... tatgttttagAAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGAGCTTGGCAAACAAAATCCTCATCTTATGCGATTGATTCAAGAGCATCAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGGgtaaggttaatctattctttgcattttcattttgttttgtttttctttttacctattaattgatgtccggtgacttaattttctgttatgttttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG