Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGGTTTGCTATTGGTTCTGCTGCTCTTGCATCTTTCCTTTTGTTTAGTGCTTATATGGATGAGGTTTCTTCATTTGCTCATGAACCTTTTAAACAGgtgcgcagaactagctacagcctaattaggcttaaatttgtttaggtccctatataatacatgctcgtttgttgatgttctgttttgttgaataggaggg...

Basic information

species Glycine max
transcript GLYMA08G24120.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24120.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G78920.2 (Arabidopsis thaliana), 5'ss of exon 11
CAAAGGGTTTGCTATTGGTTCTGCTGCTCTTGCATCTTTCCTTTTGTTTAGTGCTTATATGGATGAGGTTTCTTCATTTGCTCATGAACCTTTTAAACAGgtgcgcagaactagctacagcctaattaggcttaaatttgtttaggtccctatataatacatgctcgtttgttgatgttctgttttgttgaataggaggg
 ||||||||||| ||||| |||||||| |||||||| |||||| | |||||||| |||||||| ||||||||  | |||||| |||   |||| ||| ||||         ||   |  |      ||  ||  |   |||| ||    || | | |||| |  || |  | | |  |                      
GAAAGGGTTTGCCATTGGATCTGCTGCACTTGCATCATTCCTTCTCTTTAGTGCGTATATGGACGAGGTTTCAGCGTTTGCTAATGTGTCTTTCAAAGAGgtagatttcgttatgcatcgttgctgtattctcga---tgttgagacaact-tctcatac-tcatcctcggataaaatcag-------------------

upper sequence: GLYMA08G24120.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G16780.1 (Arabidopsis thaliana), 5'ss of exon 12
CAAAGGGTTTGCTATTGGTTCTGCTGCTCTTGCATCTTTCCTTTTGTTTAGTGCTTATATGGATGAGGTTTCTTCATTTGCTCATGAACCTTTTAAACAGgtgcgcagaactagctacagcctaattaggcttaaatttgtttaggtccctatataatacatgctcgtttgttgatgttctgttttgttgaataggaggg
 ||||||||||||||||| |||||||| |||||||| |||||| | |||||||| |||||||| ||||||||  | |||||| ||| | |||||||| |||| |     | |   |||    |  |     |    ||  | |   ||| |        ||| ||| |    |||| |  |||  |      ||    | 
AAAAGGGTTTGCTATTGGATCTGCTGCCCTTGCATCATTCCTTCTTTTTAGTGCGTATATGGACGAGGTTTCAGCGTTTGCTAATGTATCTTTTAAAGAGgtac-----attttttactctttggt-gtattctgtttcctcttattccattccactcgcatactcatc--ctgat-tcttgtcctcacatctaaacag-

upper sequence: GLYMA08G24120.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 11
CAAAGGGTTTGCTATTGGTTCTGCTGCTCTTGCATCTTTCCTTTTGTTTAGTGCTTATATGGATGAGGTTTCTTCATTTGCTCATGAACCTTTTAAACAGgtgcgcaga-actagct--acagcctaattaggcttaaatttgtttaggtccctatataatacatgctcgtttgttgatgttctgttttgttgaataggaggg
||| || || || ||||| || || || || ||||| |||||| |||| |||||||||||||||||||| ||  |||||||||||||||||||||| |||||  |  || ||||  |  |   | | ||   | ||| |||  | ||  || ||   |  |  ||| |  |    | |                         
CAAGGGATTCGCCATTGGATCCGCGGCACTCGCATCCTTCCTTCTGTTCAGTGCTTATATGGATGAGGTGTCAGCATTTGCTCATGAACCTTTTAAGCAGgtaagtggacactactttgatctcttcatcgtgtttacattc-tctaactcactgcttt-tttatgttaatcaccttacag----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58022630|gb|CX709371.1|CX709371
EST:     GTGCTTATATGGATGAGGTTTCTTCATTTGCTCATGAACCTTTTAAACAG                         GTTGATATTGCAATTCCCGAAGTTTTCGTTGGTGGGTTGCTAGGTTCCATG
genomic: GTGCTTATATGGATGAGGTTTCTTCATTTGCTCATGAACCTTTTAAACAGgtgcgcagaa ... tgaattgcagGTTGATATTGCAATTCCCGAAGTTTTCGTTGGTGGGTTGCTAGGTTCCATG
EST: gi|120529405|gb|EH257539.1|EH257539
EST:     GTGCTTATATGGATGAGGTTTCTTCATTTGCTCATGAACCTGTTAAACAG                         GTGGATATTGCAATTCCCGAAGTTTTCGTTGGTGGGTTGCTAGGTTCCATG
genomic: GTGCTTATATGGATGAGGTTTCTTCATTTGCTCATGAACCTTTTAAACAGgtgcgcagaa ... tgaattgcagGTTGATATTGCAATTCCCGAAGTTTTCGTTGGTGGGTTGCTAGGTTCCATG
EST: gi|58022340|gb|CX709081.1|CX709081
EST:     GTGCTTATATGGATGAGGTTTCTTCATTTGCTCATGAACCTTTTAAACAG                         GTTGATATTGCAATTCCCGAAGTTTTCGTTGGTGGGTTGCTAGGTTCCATG
genomic: GTGCTTATATGGATGAGGTTTCTTCATTTGCTCATGAACCTTTTAAACAGgtgcgcagaa ... tgaattgcagGTTGATATTGCAATTCCCGAAGTTTTCGTTGGTGGGTTGCTAGGTTCCATG