Sequence
atgc intronic sequence ATGC exonic sequenceGGAGAAATCAATGAAAGGCCTGTCAAGTTTGATTAGGAGATCAACACCATCTTCTTTTACTTATATATGTGAGAAGAATGGAGGATCTCTCACAGACAAAgtatgatattgcacttacaatatttgtattgtcatatttagtatttaccatatgatgttctgggtgttggtataattttccattcaaccgagtacctgcag
Basic information
species | Glycine max |
transcript | GLYMA08G23730.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G23730.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G51590.1 (Arabidopsis thaliana), 5'ss of exon 10
GGAGAAATCAATGAAAGGCCTGTCAAGTTTGATTAGGAGATCAACACCATCTTCTTTTACTTATATATGTGAGAAGAATGGAGGATCTCTCACAGACAAAgtatga--tattgcacttacaa-tatttgtattgtcatatttagtatttaccatatgatgttctgggtgttggtataattttccattcaaccgagtacctgcag
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GGAGAAATCAATGAAAGGTTTGTTAAGCTTGGTCAAGAAATCAACACCTTCATCATTTACGTATATATGTGAGAAGAACGGAAATAATTTGATTGATAAGgtaaaaactattctaatttcaactctctactttgagaattttgttggttttgacataat-ttcaacattcag--------------------------------
upper sequence: GLYMA08G23730.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0054g00370.t01 (Vitis vinifera), 5'ss of exon 10
GGAGAAATCAATGAAAGGCCTGTCAAGTTTGATTAGGAGATCAACACCATCTTCTTTTACTTATATATGTGAGAAGAATGGAGGATCTCTCACAGACAAAgtatgatattgcacttacaatatttgtattgtcatatttagtatttaccatatgatgttctgggtgttggtataattttccattcaaccgagtacctgcag
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GGAGACATCTATGAAAGGTCTGTTAAGCTTGGTCCGAAGAACAACACCATCATCTTTCACATATATATGTGAGAAAAATGGGGATTCTCTGCATGACAAGgtaatat-ttgattccaaaatactcat-ttgttctact--gcact-aatatttgaccattagcattttggtgctatttgtttttt--ctatatatgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27445891|gb|CA953014.1|CA953014EST: GGATCTCTCACAGACAAA ATGGATGAACTAGCATGCTTTGCTCCAGGGATGATTGCTTTGGGATCATTT
genomic: GGATCTCTCACAGACAAAgtatgatatt ... gtacctgcagATGGATGAACTAGCATGCTTTGCTCCAGGGATGATTGCTTTGGGATCATTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGAAATCAATGAAAGGCCTGTCAAGTTTGATTAGGAGATCAACACCATCTTCTTTTACTTATATATGTGAGAAGAATGGAGGATCTCTCACAGACAAAgtatgatattgcacttacaatatttgtattgtcatatttagtatttaccatatgatgttctgggtgttggtataattttccattcaaccgagtacctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT