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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATATGACCTTTACAGCAAGAGCAAAATTCGAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccgtttggaaactttagtatccttttctttcaattttttttttttaaatcatcgaatttgtaatttgtactaaagtgcatttatttgctgcag

Basic information

species Glycine max
transcript GLYMA08G21300.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21300.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0002g02940.t01 (Vitis vinifera), 5'ss of exon 10
CAAATATGACCTTTACAGCAAGAGCAAAATTCGAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccgtttggaaactttagtatcctttt--ctttcaattttt----tttttttaaatcatcgaat--ttgtaatttgtactaaagtgcatttatttgctgcag
|||||||||||||||||||||||||||| | ||||| |||||||| | |||||  ||||||||||| ||||||||||||||||| || || | |        |||| | || |||  | || ||| |      | ||| ||| |  || ||   ||  ||||| |     |    | || ||        
CAAATATGACCTTTACAGCAAGAGCAAAGTCCGAATCGATGTTGAGAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAGgttagaactgctctattttgttagaacccatttgacattgaatataaggagtgtttctaagttttctaacacttcaaatttttttatcaaaatagttgtt--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14989999|gb|BI315672.1|BI315672
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|17022499|gb|BM093533.1|BM093533
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|7029108|gb|AW458891.1|AW458891
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|58015895|gb|CX702637.1|CX702637
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|15287557|gb|BI471448.1|BI471448
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|16995707|gb|BM085079.1|BM085079
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|9901421|gb|BE610389.1|BE610389
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|58016178|gb|CX702920.1|CX702920
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|254329843|gb|GR839396.1|GR839396
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|10709600|gb|BF009324.1|BF009324
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTCTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|163926148|gb|EH038402.1|EH038402
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG