1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCTAATGCCAGAGTCTGTGCTCTCAGCTCCTAAGGAAAAGAAGCTCAGTGGTAGACAGTGGTTTGAAAGTGGAAGAGCGgtactacttgtccttactatagttattcctaaccttgatatcctaaattagtatttttgtgtcaaatgttcaacaacccaaacaaataatttggtaccag...
species | Glycine max |
transcript | GLYMA08G20940.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTAAGGAAAAGAAGCTCAGTGGTAGACAGTGGTTTGAAAGTGGAAGAGCG AAAGGTGTGGCTGCTGTCGCTGAGGAATCTGAAGGGGAGGACGAGGAAGATEST: gi|151410528|gb|EV280343.1|EV280343
genomic: CTAAGGAAAAGAAGCTCAGTGGTAGACAGTGGTTTGAAAGTGGAAGAGCGgtactacttg ... tcattcacagAAAGGTGTGGCTGCTGTCGCTGAGGAATCTGAAGGGGAGGACGAGGAAGAT
EST: CTAAGGAAAAGAAGCTCAGTGGTAGACAGTGGTTTGAAAGTGGAAGAGCG AAAGGTGTGGCTGCTGTCGCTGAGGAATCEST: gi|192323572|gb|FK015338.1|FK015338
genomic: CTAAGGAAAAGAAGCTCAGTGGTAGACAGTGGTTTGAAAGTGGAAGAGCGgtactacttg ... tcattcacagAAAGGTGTGGCTGCTGTCGCTGAGGAATC
EST: TAAGGAAAAGAAGCTCAGTGGTAGACAGTGGTTTTGAAAGTGGAAGAGCG AAAGGTGTGGCTGCTGTCGCTGAGGAATCTGAAGGGGAGGACGAGGAAGATEST: gi|151408650|gb|EV278458.1|EV278458
genomic: TAAGGAAAAGAAGCTCAGTGGTAGACAGTGGTTT-GAAAGTGGAAGAGCGgtactacttg ... tcattcacagAAAGGTGTGGCTGCTGTCGCTGAGGAATCTGAAGGGGAGGACGAGGAAGAT
EST: CTAAGGAAAAGAAGCTCAGTGGTAGACAGTGGTTTGAAAGTGGAAGAGCG AAAGGTGTGGCTGTTGTCGCTGAG-AATCTGAA
genomic: CTAAGGAAAAGAAGCTCAGTGGTAGACAGTGGTTTGAAAGTGGAAGAGCGgtactacttg ... tcattcacagAAAGGTGTGGCTGCTGTCGCTGAGGAATCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAATGCCAGAGTCTGTGCTCTCAGCTCCTAAGGAAAAGAAGCTCAGTGGTAGACAGTGGTTTGAAAGTGGAAGAGCGgtactacttgtccttactatagttattcctaaccttgatatcctaaattagtatttttgtgtcaaatgttcaacaacccaaacaaataatttggtaccag
- - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA