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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAAAGGGCTTTTGATCTAGCTCGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGGgtaggtattcagtttactctaaatgtcattaatacgtgaaccgtgaataacttacgctatttattaatctcttcacatggttccttatgcctaagaagtt...

Basic information

species Glycine max
transcript GLYMA08G19270.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4260401|gb|AI416897.1|AI416897
EST:     TTGATCTAGCTCGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGG                         GTTAAAGGACTTCTCAAAGACAGGAAATTGGAAACACTAGTAGATGCAGAT
genomic: TTGATCTAGCTCGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGGgtaggtattc ... ttgagtccagGTTAAAGGACTTCTCAAAGACAGGAAATTGGAAACACTAGTAGATGCAGAT
EST: gi|254340912|gb|GR854640.1|GR854640
EST:     TTGATCTAGCTCGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGG                         GTTAAAGGACTTCTCAAAGACAGGAAATTGGAAACACTAGTAGATGCAGAT
genomic: TTGATCTAGCTCGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGGgtaggtattc ... ttgagtccagGTTAAAGGACTTCTCAAAGACAGGAAATTGGAAACACTAGTAGATGCAGAT
EST: gi|254340913|gb|GR854641.1|GR854641
EST:     TTGATCTAGCTCGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGG                         GTTAAAGGACTTCTCAAAGACAGGAAATTGGAAACACTAGTAGATGCAGAT
genomic: TTGATCTAGCTCGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGGgtaggtattc ... ttgagtccagGTTAAAGGACTTCTCAAAGACAGGAAATTGGAAACACTAGTAGATGCAGAT