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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTAGGAACTGATCGGTGTGCCTTTAATTCCACCCAGAAAGCTCTTGGAATTGATGACTTCCAGAAAATTCCTAATGGTGTCAATGgtaatcacatgatggatggtcctagatatttccagcctaaatgcattctagttgattttgaaatatttccttactaatgtgctttgcgacctgatatctatag

Basic information

species Glycine max
transcript GLYMA08G18920.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18920.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 9
CTGGTAGGAACTGATCGGTGTGCCTTTAATTCCACCCAGAAAGCTCTTGGAATTGATGACTTCCAGAAAATTCCTAATGGTGTCAATGgtaatcacatgatgg-atggtcctagatatttcc-agcctaaatgcattctagttgattttgaaatatttccttactaatgtgctttgcgacctgatatctatag-------------------
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CTTGTAGGGACTGATCATTGTGCCTTCAATTCCACACAGAAAGCTTTTGGAATTGATGATTTCCGAAAAATTCCTAATGGTGTCAATGgtaat-acaagttatcatcaccactgatatttgggaagtcaattattatttccctagttatcaagt-tggtctcatttttccgttcta-attcttatatttgttgcaatcctgggaacaattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120531838|gb|EH259971.1|EH259971
EST:     GAAAGCTCTTGGAATTGATGACTTCCAGAAAATTCCTAATGGTGTCAATG                         GTATTGAAGAAAGGATGCATTTGGTATGGGATATCATGGTGGTAAGATAAT
genomic: GAAAGCTCTTGGAATTGATGACTTCCAGAAAATTCCTAATGGTGTCAATGgtaatcacat ... atatctatagGTATTGAAGAAAGGATGCATTTGGTATGGGATATCATGGTGGTAAGATAAT